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    Nap1l1 nucleosome assembly protein 1-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 53605, updated on 23-Jun-2021

    Summary

    Official Symbol
    Nap1l1provided by MGI
    Official Full Name
    nucleosome assembly protein 1-like 1provided by MGI
    Primary source
    MGI:MGI:1855693
    See related
    Ensembl:ENSMUSG00000058799
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    NAP-1; AA407126; AI256722; D10Ertd68; D10Ertd68e
    Expression
    Biased expression in CNS E11.5 (RPKM 94.0), CNS E14 (RPKM 38.5) and 12 other tissues See more
    Orthologs
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    Genomic context

    See Nap1l1 in Genome Data Viewer
    Location:
    10 D1; 10 58.67 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (111308754..111334011)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (111472882..111498150)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (110910248..110935206)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40761 Neighboring gene predicted gene, 30145 Neighboring gene predicted gene, 25117 Neighboring gene high mobility group box 2 pseudogene Neighboring gene pleckstrin homology like domain, family A, member 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Endonuclease-mediated (1)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables chromatin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables kinase binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within nervous system development IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in nucleosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in positive regulation of neural precursor cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of neurogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in neuron projection ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    nucleosome assembly protein 1-like 1
    Names
    NAP-1-related protein
    brain protein DN38
    nucleosome assembly protein-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001358932.1NP_001345861.1  nucleosome assembly protein 1-like 1 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AK011301, AK012250, AW488539, BF458793, BM948894, BY253657
      Conserved Domains (1) summary
      pfam00956
      Location:15280
      NAP; Nucleosome assembly protein (NAP)
    2. NM_015781.5NP_056596.1  nucleosome assembly protein 1-like 1 isoform 2

      See identical proteins and their annotated locations for NP_056596.1

      Status: VALIDATED

      Source sequence(s)
      AK011301, AK136161, BF458793
      Consensus CDS
      CCDS36058.1
      UniProtKB/Swiss-Prot
      P28656
      Related
      ENSMUSP00000070068.9, ENSMUST00000065917.16
      Conserved Domains (1) summary
      pfam00956
      Location:78343
      NAP; Nucleosome assembly protein (NAP)

    RNA

    1. NR_152558.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC166253, AK011301, AK032896, BF458793, BY253657, CF739780

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      111308754..111334011
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030245178.2XP_030101038.1  nucleosome assembly protein 1-like 1 isoform X1

      Related
      ENSMUSP00000151750.2, ENSMUST00000217908.2
      Conserved Domains (1) summary
      pfam00956
      Location:78343
      NAP; Nucleosome assembly protein (NAP)
    2. XM_030245179.1XP_030101039.1  nucleosome assembly protein 1-like 1 isoform X3

      Conserved Domains (1) summary
      pfam00956
      Location:15280
      NAP; Nucleosome assembly protein (NAP)
    3. XM_036155892.1XP_036011785.1  nucleosome assembly protein 1-like 1 isoform X2

      Conserved Domains (1) summary
      pfam00956
      Location:35302
      NAP; Nucleosome assembly protein (NAP)

    RNA

    1. XR_001779558.2 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001146707.1: Suppressed sequence

      Description
      NM_001146707.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
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