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    Hpcal1 hippocalcin-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 53602, updated on 5-Aug-2018

    Summary

    Official Symbol
    Hpcal1provided by MGI
    Official Full Name
    hippocalcin-like 1provided by MGI
    Primary source
    MGI:MGI:1855689
    See related
    Ensembl:ENSMUSG00000071379
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Nvp3; NVL-3; NVP-3; Vnsl3; Vsnl3; VILIP3
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 64.1), lung adult (RPKM 42.5) and 27 other tissues See more

    Genomic context

    See Hpcal1 in Genome Data Viewer
    Location:
    12; 12 A1.2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (17690750..17791944)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (17697620..17798732)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 36862 Neighboring gene predicted gene, 29864 Neighboring gene predicted gene, 40842 Neighboring gene predicted gene, 40312 Neighboring gene predicted gene 9222

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    hippocalcin-like protein 1
    Names
    neural visinin-like protein 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001361645.1NP_001348574.1  hippocalcin-like protein 1

      Status: VALIDATED

      Source sequence(s)
      AC138342, AC154636
      Conserved Domains (1) summary
      COG5126
      Location:13179
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    2. NM_016677.5NP_057886.1  hippocalcin-like protein 1

      See identical proteins and their annotated locations for NP_057886.1

      Status: VALIDATED

      Source sequence(s)
      AC138342, AC154636
      Consensus CDS
      CCDS25830.1
      UniProtKB/Swiss-Prot
      P62748
      Related
      ENSMUSP00000071756.3, ENSMUST00000071858.4
      Conserved Domains (1) summary
      COG5126
      Location:13179
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      17690750..17791944
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006515156.3XP_006515219.1  hippocalcin-like protein 1 isoform X1

      UniProtKB/Swiss-Prot
      P62748
      Conserved Domains (1) summary
      COG5126
      Location:13179
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    2. XM_006515157.2XP_006515220.1  hippocalcin-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006515220.1

      UniProtKB/Swiss-Prot
      P62748
      Related
      ENSMUSP00000152772.1, ENSMUST00000222944.1
      Conserved Domains (1) summary
      COG5126
      Location:13179
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    RNA

    1. XR_872424.1 RNA Sequence

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