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    Cd164 CD164 antigen [ Mus musculus (house mouse) ]

    Gene ID: 53599, updated on 26-Sep-2022

    Summary

    Official Symbol
    Cd164provided by MGI
    Official Full Name
    CD164 antigenprovided by MGI
    Primary source
    MGI:MGI:1859568
    See related
    Ensembl:ENSMUSG00000019818 AllianceGenome:MGI:1859568
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A24; A115; MSSP; MGC-24
    Summary
    Predicted to act upstream of or within heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules. Predicted to be located in plasma membrane. Predicted to be active in endosome and lysosome. Is expressed in several structures, including alimentary system; central nervous system; gonad; musculoskeletal system; and sensory organ. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 66. Orthologous to human CD164 (CD164 molecule). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in mammary gland adult (RPKM 103.9), placenta adult (RPKM 76.1) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Cd164 in Genome Data Viewer
    Location:
    10 B2; 10 22.46 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (41395496..41407038)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (41519500..41531042)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene sphingomyelin phosphodiesterase 2, neutral Neighboring gene peptidylprolyl isomerase (cyclophilin)-like 6 Neighboring gene coiled-coil domain containing 162 Neighboring gene RIKEN cDNA 5730435O14 gene Neighboring gene predicted gene 17196

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasmic vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    is_active_in endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in endosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in lysosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in lysosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    sialomucin core protein 24
    Names
    MGC-24v
    MUC-24
    c-Myc binding protein
    endolyn
    multi-glycosylated core protein 24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_016898.2NP_058594.1  sialomucin core protein 24 precursor

      See identical proteins and their annotated locations for NP_058594.1

      Status: PROVISIONAL

      Source sequence(s)
      AC132290
      Consensus CDS
      CCDS23806.1
      UniProtKB/Swiss-Prot
      Q9R0L9, Q9Z317
      Related
      ENSMUSP00000019962.9, ENSMUST00000019962.15
      Conserved Domains (1) summary
      pfam05283
      Location:57197
      MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      41395496..41407038
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)