Format

Send to:

Choose Destination
    • Showing Current items.

    Cd164 CD164 antigen [ Mus musculus (house mouse) ]

    Gene ID: 53599, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cd164provided by MGI
    Official Full Name
    CD164 antigenprovided by MGI
    Primary source
    MGI:MGI:1859568
    See related
    Ensembl:ENSMUSG00000019818
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A24; A115; MSSP; MGC-24; AA589639; AW540279
    Expression
    Ubiquitous expression in mammary gland adult (RPKM 103.9), placenta adult (RPKM 76.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See Cd164 in Genome Data Viewer
    Location:
    10 B2; 10 22.46 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (41519500..41531042)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (41239306..41250848)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 1 Neighboring gene sphingomyelin phosphodiesterase 2, neutral Neighboring gene peptidylprolyl isomerase (cyclophilin)-like 6 Neighboring gene coiled-coil domain containing 162 Neighboring gene RIKEN cDNA 5730435O14 gene Neighboring gene microRNA 3473b

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Lysosome, organism-specific biosystem (from KEGG)
      Lysosome, organism-specific biosystemLysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than...
    • Lysosome, conserved biosystem (from KEGG)
      Lysosome, conserved biosystemLysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than...

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    cell adhesion ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    muscle organ development IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasmic vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endosome ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    lysosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    lysosome ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    sialomucin core protein 24
    Names
    MGC-24v
    MUC-24
    c-Myc binding protein
    endolyn
    multi-glycosylated core protein 24

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_016898.2NP_058594.1  sialomucin core protein 24 precursor

      See identical proteins and their annotated locations for NP_058594.1

      Status: PROVISIONAL

      Source sequence(s)
      AC132290
      Consensus CDS
      CCDS23806.1
      UniProtKB/Swiss-Prot
      Q9R0L9
      Related
      ENSMUSP00000019962.8, ENSMUST00000019962.14
      Conserved Domains (1) summary
      pfam05283
      Location:57197
      MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      41519500..41531042
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center