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    Banp BTG3 associated nuclear protein [ Mus musculus (house mouse) ]

    Gene ID: 53325, updated on 31-Jan-2019

    Summary

    Official Symbol
    Banpprovided by MGI
    Official Full Name
    BTG3 associated nuclear proteinprovided by MGI
    Primary source
    MGI:MGI:1889023
    See related
    Ensembl:ENSMUSG00000025316
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    SMAR1; AA408158
    Expression
    Ubiquitous expression in ovary adult (RPKM 15.5), thymus adult (RPKM 13.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Banp in Genome Data Viewer
    Location:
    8 E1; 8 70.82 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (121949786..122029260)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (124474433..124553158)

    Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 Neighboring gene cDNA sequence BC048644 Neighboring gene carbonic anhydrase 5a, mitochondrial Neighboring gene ornithine decarboxylase, structural 1 pseudogene Neighboring gene microRNA 7237 Neighboring gene zinc finger protein 469 Neighboring gene predicted gene, 34413 Neighboring gene predicted gene, 39268

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    p53 binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    chromatin organization IEA
    Inferred from Electronic Annotation
    more info
     
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of protein catabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of transcription, DNA-templated IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein localization to nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    protein BANP
    Names
    scaffold/matrix-associated region-1-binding protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001110100.2NP_001103570.1  protein BANP isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) uses an alternate splice site in the coding region compared to variant 2. The resulting protein (isoform 1) is shorter but has the same N- and C-termini compared to isoform 2.
      Source sequence(s)
      AC116772, BC062641, CX207431, DV661446
      UniProtKB/Swiss-Prot
      Q8VBU8
      Conserved Domains (1) summary
      smart01025
      Location:257330
      BEN; The BEN domain is found in diverse animal proteins
    2. NM_001285981.1NP_001272910.1  protein BANP isoform 3

      See identical proteins and their annotated locations for NP_001272910.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate in-frame exon in the coding region compared to variant 2. The resulting protein (isoform 3) is shorter but has the same N- and C-termini compared to isoform 2.
      Source sequence(s)
      AC116772, BC062641, CX207431
      Consensus CDS
      CCDS72176.1
      UniProtKB/Swiss-Prot
      Q8VBU8
      Related
      ENSMUSP00000026354.8, ENSMUST00000026354.14
      Conserved Domains (1) summary
      smart01025
      Location:218291
      BEN; The BEN domain is found in diverse animal proteins
    3. NM_001285983.1NP_001272912.1  protein BANP isoform 4

      See identical proteins and their annotated locations for NP_001272912.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks an alternate in-frame exon and uses an alternate splice site in the coding region compared to variant 2. The resulting protein (isoform 4) is shorter but has the same N- and C-termini compared to isoform 2.
      Source sequence(s)
      AC116772, AF235503, CX207431, DV661446
      Consensus CDS
      CCDS72177.1
      UniProtKB/Swiss-Prot
      Q8VBU8
      Related
      ENSMUSP00000090766.6, ENSMUST00000093078.12
      Conserved Domains (1) summary
      smart01025
      Location:218291
      BEN; The BEN domain is found in diverse animal proteins
    4. NM_016812.4NP_058092.2  protein BANP isoform 2

      See identical proteins and their annotated locations for NP_058092.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents the longest transcript and encodes the longest protein (isoform 2).
      Source sequence(s)
      AC116772, BC062641, CX207431
      Consensus CDS
      CCDS40502.1
      UniProtKB/Swiss-Prot
      Q8VBU8
      Related
      ENSMUSP00000132095.1, ENSMUST00000170857.7
      Conserved Domains (1) summary
      smart01025
      Location:257330
      BEN; The BEN domain is found in diverse animal proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

      Range
      121949786..122029260
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017312899.1XP_017168388.1  protein BANP isoform X1

      UniProtKB/Swiss-Prot
      Q8VBU8
      Conserved Domains (1) summary
      smart01025
      Location:257330
      BEN; The BEN domain is found in diverse animal proteins
    2. XM_011248442.1XP_011246744.1  protein BANP isoform X2

      UniProtKB/Swiss-Prot
      Q8VBU8
      Related
      ENSMUSP00000133783.1, ENSMUST00000173254.7
      Conserved Domains (1) summary
      smart01025
      Location:257330
      BEN; The BEN domain is found in diverse animal proteins
    3. XM_011248444.1XP_011246746.1  protein BANP isoform X4

      Conserved Domains (1) summary
      smart01025
      Location:218291
      BEN; The BEN domain is found in diverse animal proteins
    4. XM_011248443.2XP_011246745.1  protein BANP isoform X3

      Conserved Domains (1) summary
      smart01025
      Location:257330
      BEN; The BEN domain is found in diverse animal proteins
    5. XM_011248445.1XP_011246747.1  protein BANP isoform X5

      Conserved Domains (1) summary
      smart01025
      Location:2396
      BEN; The BEN domain is found in diverse animal proteins
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