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    Banp BTG3 associated nuclear protein [ Mus musculus (house mouse) ]

    Gene ID: 53325, updated on 22-Aug-2021

    Summary

    Official Symbol
    Banpprovided by MGI
    Official Full Name
    BTG3 associated nuclear proteinprovided by MGI
    Primary source
    MGI:MGI:1889023
    See related
    Ensembl:ENSMUSG00000025316
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    SM; SMAR1; AA408158
    Expression
    Ubiquitous expression in ovary adult (RPKM 15.5), thymus adult (RPKM 13.6) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Banp in Genome Data Viewer
    Location:
    8 E1; 8 70.82 cM
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (122674711..122755999)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (121947972..122029260)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (124474433..124553158)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 Neighboring gene cDNA sequence BC048644 Neighboring gene carbonic anhydrase 5a, mitochondrial Neighboring gene predicted gene, 27011 Neighboring gene ornithine decarboxylase, structural 1 pseudogene Neighboring gene microRNA 7237 Neighboring gene zinc finger protein 469 Neighboring gene predicted gene, 34413 Neighboring gene predicted gene, 39268

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1)  1 citation
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables p53 binding IDA
    Inferred from Direct Assay
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    protein BANP
    Names
    scaffold/matrix-associated region-1-binding protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001110100.2NP_001103570.1  protein BANP isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) uses an alternate splice site in the coding region compared to variant 2. The resulting protein (isoform 1) is shorter but has the same N- and C-termini compared to isoform 2.
      Source sequence(s)
      AC116772, BC062641, CX207431, DV661446
      UniProtKB/Swiss-Prot
      Q8VBU8
      Conserved Domains (1) summary
      smart01025
      Location:257330
      BEN; The BEN domain is found in diverse animal proteins
    2. NM_001285981.1NP_001272910.1  protein BANP isoform 3

      See identical proteins and their annotated locations for NP_001272910.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate in-frame exon in the coding region compared to variant 2. The resulting protein (isoform 3) is shorter but has the same N- and C-termini compared to isoform 2.
      Source sequence(s)
      AC116772, BC062641, CX207431
      Consensus CDS
      CCDS72176.1
      UniProtKB/Swiss-Prot
      Q8VBU8
      Related
      ENSMUSP00000026354.9, ENSMUST00000026354.15
      Conserved Domains (1) summary
      smart01025
      Location:218291
      BEN; The BEN domain is found in diverse animal proteins
    3. NM_001285983.1NP_001272912.1  protein BANP isoform 4

      See identical proteins and their annotated locations for NP_001272912.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks an alternate in-frame exon and uses an alternate splice site in the coding region compared to variant 2. The resulting protein (isoform 4) is shorter but has the same N- and C-termini compared to isoform 2.
      Source sequence(s)
      AC116772, AF235503, CX207431, DV661446
      Consensus CDS
      CCDS72177.1
      UniProtKB/Swiss-Prot
      Q8VBU8
      Related
      ENSMUSP00000090766.7, ENSMUST00000093078.13
      Conserved Domains (1) summary
      smart01025
      Location:218291
      BEN; The BEN domain is found in diverse animal proteins
    4. NM_016812.4NP_058092.2  protein BANP isoform 2

      See identical proteins and their annotated locations for NP_058092.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents the longest transcript and encodes the longest protein (isoform 2).
      Source sequence(s)
      AC116772, BC062641, CX207431
      Consensus CDS
      CCDS40502.1
      UniProtKB/Swiss-Prot
      Q8VBU8
      Related
      ENSMUSP00000132095.2, ENSMUST00000170857.8
      Conserved Domains (1) summary
      smart01025
      Location:257330
      BEN; The BEN domain is found in diverse animal proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      122674711..122755999
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017312899.2XP_017168388.1  protein BANP isoform X1

      UniProtKB/Swiss-Prot
      Q8VBU8
      Conserved Domains (1) summary
      smart01025
      Location:257330
      BEN; The BEN domain is found in diverse animal proteins
    2. XM_030243673.2XP_030099533.1  protein BANP isoform X4

      Conserved Domains (1) summary
      smart01025
      Location:218291
      BEN; The BEN domain is found in diverse animal proteins
    3. XM_030243672.1XP_030099532.1  protein BANP isoform X3

      Conserved Domains (1) summary
      smart01025
      Location:257330
      BEN; The BEN domain is found in diverse animal proteins
    4. XM_011248442.1XP_011246744.1  protein BANP isoform X2

      UniProtKB/Swiss-Prot
      Q8VBU8
      Related
      ENSMUSP00000133783.2, ENSMUST00000173254.8
      Conserved Domains (1) summary
      smart01025
      Location:257330
      BEN; The BEN domain is found in diverse animal proteins
    5. XM_030243675.2XP_030099535.1  protein BANP isoform X6

      Conserved Domains (1) summary
      smart01025
      Location:116189
      BEN; The BEN domain is found in diverse animal proteins
    6. XM_030243674.2XP_030099534.1  protein BANP isoform X5

      Conserved Domains (1) summary
      smart01025
      Location:116189
      BEN; The BEN domain is found in diverse animal proteins
    7. XM_011248445.1XP_011246747.1  protein BANP isoform X7

      Conserved Domains (1) summary
      smart01025
      Location:2396
      BEN; The BEN domain is found in diverse animal proteins
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