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    PLAGL1 PLAG1 like zinc finger 1 [ Homo sapiens (human) ]

    Gene ID: 5325, updated on 17-Jun-2024

    Summary

    Official Symbol
    PLAGL1provided by HGNC
    Official Full Name
    PLAG1 like zinc finger 1provided by HGNC
    Primary source
    HGNC:HGNC:9046
    See related
    Ensembl:ENSG00000118495 MIM:603044; AllianceGenome:HGNC:9046
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ZAC; LOT1; ZAC1
    Summary
    This gene encodes a C2H2 zinc finger protein that functions as a suppressor of cell growth. This gene is often deleted or methylated and silenced in cancer cells. In addition, overexpression of this gene during fetal development is thought to be the causal factor for transient neonatal diabetes mellitus (TNDM). Alternative splicing and the use of alternative promoters results in multiple transcript variants encoding two different protein isoforms. The P1 downstream promoter of this gene is imprinted, with preferential expression from the paternal allele in many tissues. [provided by RefSeq, Nov 2015]
    Expression
    Broad expression in placenta (RPKM 68.4), skin (RPKM 15.8) and 16 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See PLAGL1 in Genome Data Viewer
    Location:
    6q24.2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (143940300..144064599, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (145132991..145257328, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (144261437..144385736, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25205 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25206 Neighboring gene MPRA-validated peak6180 silencer Neighboring gene LTV1 ribosome biogenesis factor Neighboring gene MPRA-validated peak6181 silencer Neighboring gene zinc finger C2HC-type containing 1B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25207 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:144279682-144280240 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:144285771-144286284 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:144293958-144294542 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:144294543-144295127 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:144328825-144329007 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17632 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17633 Neighboring gene hydatidiform mole associated and imprinted Neighboring gene FKBP prolyl isomerase 7 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25208 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25209 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17634 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17635 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17636 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25210 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17637 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:144410739-144410950 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25211 Neighboring gene uncharacterized LOC105378036 Neighboring gene splicing factor 3b subunit 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    Copy number response

    Description
    Copy number response
    Haploinsufficency

    No evidence available (Last evaluated 2012-08-26)

    ClinGen Genome Curation Page
    Triplosensitivity

    No evidence available (Last evaluated 2012-08-26)

    ClinGen Genome Curation Page

    HIV-1 interactions

    Protein interactions

    Protein Gene Interaction Pubs
    Vif vif HIV-1 Vif downregulates the expression of pleiomorphic adenoma gene-like 1 (PLAGL1) in Vif-expression T cells PubMed

    Go to the HIV-1, Human Interaction Database

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC126275, MGC126276, DKFZp781P1017

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
     
    located_in intracellular membrane-bounded organelle IDA
    Inferred from Direct Assay
    more info
     
    located_in nuclear body IDA
    Inferred from Direct Assay
    more info
     
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
     

    General protein information

    Preferred Names
    zinc finger protein PLAGL1
    Names
    PLAG-like 1
    lost on transformation 1
    pleiomorphic adenoma gene-like 1
    tumor suppressor ZAC

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009384.2 RefSeqGene

      Range
      5000..129299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_1101

    mRNA and Protein(s)

    1. NM_001080951.3NP_001074420.1  zinc finger protein PLAGL1 isoform 2

      See identical proteins and their annotated locations for NP_001074420.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) initiates from the P2 promoter and differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AI741398, AJ311395, DA675185, DA991276, EF100448
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    2. NM_001080952.3NP_001074421.1  zinc finger protein PLAGL1 isoform 2

      See identical proteins and their annotated locations for NP_001074421.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4, also known as P1G) initiates from the P1 promoter and differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AI741398, AJ311395, EF100448, EF100452, U72621
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    3. NM_001080953.3NP_001074422.1  zinc finger protein PLAGL1 isoform 2

      See identical proteins and their annotated locations for NP_001074422.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (5, also known as P1E) initiates from the P1 promoter and differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AI741398, AJ311395, EF100448, EF100450, U72621
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Related
      ENSP00000496979.1, ENST00000649307.1
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    4. NM_001080954.3NP_001074423.1  zinc finger protein PLAGL1 isoform 2

      See identical proteins and their annotated locations for NP_001074423.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (6, also known as P1D) initiates from the P1 promoter and differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AI741398, AJ311395, DA595200, EF100448, EF100449, U72621
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    5. NM_001080955.3NP_001074424.1  zinc finger protein PLAGL1 isoform 1

      See identical proteins and their annotated locations for NP_001074424.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (7, also known as P2C) initiates from the P2 promoter, differs in the 5' UTR and 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (1, also known as ZACdelta2) has a shorter N-terminus than isoform 2. Variants 7, 8, 9, 11, 13, 14, 21, 24, and 26 all encode the same isoform (1).
      Source sequence(s)
      AI741398, AJ311395, DA675185, DA991276, EF100440
      Consensus CDS
      CCDS5203.1
      UniProtKB/Swiss-Prot
      Q9UM63
      UniProtKB/TrEMBL
      A1YLA2
      Conserved Domains (3) summary
      COG5236
      Location:28155
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:7090
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1032
      zf-C2H2; Zinc finger, C2H2 type
    6. NM_001080956.3NP_001074425.1  zinc finger protein PLAGL1 isoform 1

      See identical proteins and their annotated locations for NP_001074425.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (8) initiates from the P1 promoter, differs in the 5' UTR and 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (1, also known as ZACdelta2) has a shorter N-terminus than isoform 2. Variants 7, 8, 9, 11, 13, 14, 21, 24, and 26 all encode the same isoform (1).
      Source sequence(s)
      AI741398, AJ311395, DA426770
      Consensus CDS
      CCDS5203.1
      UniProtKB/Swiss-Prot
      Q9UM63
      Related
      ENSP00000395960.2, ENST00000417959.4
      Conserved Domains (3) summary
      COG5236
      Location:28155
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:7090
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1032
      zf-C2H2; Zinc finger, C2H2 type
    7. NM_001289037.2NP_001275966.1  zinc finger protein PLAGL1 isoform 1

      See identical proteins and their annotated locations for NP_001275966.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (9, also known as P2B) initiates from the P2 promoter, differs in the 5' UTR and 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (1, also known as ZACdelta2) has a shorter N-terminus than isoform 2. Variants 7, 8, 9, 11, 13, 14, 21, 24, and 26 all encode the same isoform (1).
      Source sequence(s)
      AJ311395, AW136077, DA675185, EF100439
      Consensus CDS
      CCDS5203.1
      UniProtKB/Swiss-Prot
      Q9UM63
      UniProtKB/TrEMBL
      A1YLA2
      Conserved Domains (3) summary
      COG5236
      Location:28155
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:7090
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1032
      zf-C2H2; Zinc finger, C2H2 type
    8. NM_001289038.2NP_001275967.1  zinc finger protein PLAGL1 isoform 1

      See identical proteins and their annotated locations for NP_001275967.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (11, also known as P2D) initiates from the P2 promoter, differs in the 5' UTR and 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (1, also known as ZACdelta2) has a shorter N-terminus than isoform 2. Variants 7, 8, 9, 11, 13, 14, 21, 24, and 26 all encode the same isoform (1).
      Source sequence(s)
      AJ311395, AW136077, DA675185, EF100441
      Consensus CDS
      CCDS5203.1
      UniProtKB/Swiss-Prot
      Q9UM63
      UniProtKB/TrEMBL
      A1YLA2
      Related
      ENSP00000392418.1, ENST00000437412.5
      Conserved Domains (3) summary
      COG5236
      Location:28155
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:7090
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1032
      zf-C2H2; Zinc finger, C2H2 type
    9. NM_001289039.2NP_001275968.1  zinc finger protein PLAGL1 isoform 1

      See identical proteins and their annotated locations for NP_001275968.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (13, also known as P2H) initiates from the P2 promoter, differs in the 5' UTR and 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (1, also known as ZACdelta2) has a shorter N-terminus than isoform 2. Variants 7, 8, 9, 11, 13, 14, 21, 24, and 26 all encode the same isoform (1).
      Source sequence(s)
      AJ311395, AW136077, DA675185, EF100443
      Consensus CDS
      CCDS5203.1
      UniProtKB/Swiss-Prot
      Q9UM63
      UniProtKB/TrEMBL
      A1YLA2
      Conserved Domains (3) summary
      COG5236
      Location:28155
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:7090
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1032
      zf-C2H2; Zinc finger, C2H2 type
    10. NM_001289040.2NP_001275969.1  zinc finger protein PLAGL1 isoform 1

      See identical proteins and their annotated locations for NP_001275969.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (14, also known as P2I) initiates from the P2 promoter, differs in the 5' UTR and 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (1, also known as ZACdelta2) has a shorter N-terminus than isoform 2. Variants 7, 8, 9, 11, 13, 14, 21, 24, and 26 all encode the same isoform (1).
      Source sequence(s)
      AJ311395, AW136077, DA675185, EF100439, EF100444
      Consensus CDS
      CCDS5203.1
      UniProtKB/Swiss-Prot
      Q9UM63
      UniProtKB/TrEMBL
      A1YLA2
      Conserved Domains (3) summary
      COG5236
      Location:28155
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:7090
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1032
      zf-C2H2; Zinc finger, C2H2 type
    11. NM_001289041.2NP_001275970.1  zinc finger protein PLAGL1 isoform 1

      See identical proteins and their annotated locations for NP_001275970.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (21, also known as P1F) initiates from the P1 promoter, differs in the 5' UTR and 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (1, also known as ZACdelta2) has a shorter N-terminus than isoform 2. Variants 7, 8, 9, 11, 13, 14, 21, 24, and 26 all encode the same isoform (1).
      Source sequence(s)
      AJ311395, AW136077, DA717476, DA806571
      Consensus CDS
      CCDS5203.1
      UniProtKB/Swiss-Prot
      Q9UM63
      Conserved Domains (3) summary
      COG5236
      Location:28155
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:7090
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1032
      zf-C2H2; Zinc finger, C2H2 type
    12. NM_001289042.2NP_001275971.1  zinc finger protein PLAGL1 isoform 2

      See identical proteins and their annotated locations for NP_001275971.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (10, also known as P2A) initiates from the P2 promoter and differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AJ311395, AW136077, DA675185, EF100438
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    13. NM_001289043.2NP_001275972.1  zinc finger protein PLAGL1 isoform 2

      See identical proteins and their annotated locations for NP_001275972.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (12, also known as P2E) initiates from the P2 promoter and differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AJ311395, AW136077, DA675185, EF100442
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Related
      ENSP00000400929.1, ENST00000444202.5
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    14. NM_001289044.2NP_001275973.1  zinc finger protein PLAGL1 isoform 2

      See identical proteins and their annotated locations for NP_001275973.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (15, also known as P2J) initiates from the P2 promoter and differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AJ311395, AW136077, DA675185, EF100445
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    15. NM_001289045.2NP_001275974.1  zinc finger protein PLAGL1 isoform 2

      See identical proteins and their annotated locations for NP_001275974.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (16) initiates from the P1 promoter and differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AJ311395, AK096331, AW136077, DA385311
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Related
      ENSP00000486355.1, ENST00000625622.2
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    16. NM_001289046.2NP_001275975.1  zinc finger protein PLAGL1 isoform 2

      See identical proteins and their annotated locations for NP_001275975.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (17) initiates from the P1 promoter and differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AJ311395, AW136077
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Related
      ENSP00000346810.2, ENST00000354765.6
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    17. NM_001289047.2NP_001275976.1  zinc finger protein PLAGL1 isoform 2

      See identical proteins and their annotated locations for NP_001275976.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (18, also known as P1A) initiates from the P1 promoter and differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AJ311395, AW136077, DA806571, EF100446
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Related
      ENSP00000400060.1, ENST00000416623.5
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    18. NM_001289048.2NP_001275977.1  zinc finger protein PLAGL1 isoform 2

      See identical proteins and their annotated locations for NP_001275977.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (19, also known as P1B) initiates from the P1 promoter and differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AJ311395, AW136077, DA806571, EF100447
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Related
      ENSP00000497492.1, ENST00000649211.1
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    19. NM_001289049.2NP_001275978.1  zinc finger protein PLAGL1 isoform 2

      See identical proteins and their annotated locations for NP_001275978.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (20, also known as P1C) initiates from the P1 promoter and differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AJ311395, AW136077, DA806571, EF100448
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    20. NM_001317156.1NP_001304085.1  zinc finger protein PLAGL1 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (22) differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AL049844, AL109755
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Related
      ENSP00000353734.2, ENST00000360537.6
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    21. NM_001317157.2NP_001304086.1  zinc finger protein PLAGL1 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (23) differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AI741398, AJ006354, AJ311395, AL109755, EF100447
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Related
      ENSP00000356543.1, ENST00000367571.3
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    22. NM_001317158.1NP_001304087.1  zinc finger protein PLAGL1 isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (24) differs in the 5' UTR and 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (1, also known as ZACdelta2) has a shorter N-terminus than isoform 2. Variants 7, 8, 9, 11, 13, 14, 21, 24, and 26 all encode the same isoform (1).
      Source sequence(s)
      AL049844, AL109755, U81992
      Consensus CDS
      CCDS5203.1
      UniProtKB/Swiss-Prot
      Q9UM63
      Related
      ENSP00000356544.1, ENST00000367572.3
      Conserved Domains (3) summary
      COG5236
      Location:28155
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:7090
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1032
      zf-C2H2; Zinc finger, C2H2 type
    23. NM_001317159.2NP_001304088.1  zinc finger protein PLAGL1 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (25) differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AI741398, AJ311395, AL031390, DB177852, EF100448
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    24. NM_001317160.2NP_001304089.1  zinc finger protein PLAGL1 isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (26) initiates from the P1 promoter, differs in the 5' UTR and 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (1) has a shorter N-terminus than isoform 2. Variants 7, 8, 9, 11, 13, 14, 21, 24, and 26 all encode the same isoform (1).
      Source sequence(s)
      AI741398, AJ311395, DA549753
      Consensus CDS
      CCDS5203.1
      UniProtKB/Swiss-Prot
      Q9UM63
      Related
      ENSP00000496815.1, ENST00000647880.1
      Conserved Domains (3) summary
      COG5236
      Location:28155
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:7090
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1032
      zf-C2H2; Zinc finger, C2H2 type
    25. NM_001317161.2NP_001304090.1  zinc finger protein PLAGL1 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (27) initiates from the P1 promoter and differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AI741398, AJ311395, AL109755, DA025970
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    26. NM_001317162.2NP_001304091.1  zinc finger protein PLAGL1 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (28) initiates from the P1 promoter and differs in the 5' UTR compared to variant 2. Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AI741398, AJ311395, DA370204
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Related
      ENSP00000501459.1, ENST00000674357.1
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]
    27. NM_006718.5NP_006709.2  zinc finger protein PLAGL1 isoform 2

      See identical proteins and their annotated locations for NP_006709.2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) initiates from the P1 promoter and encodes the longer isoform (2). Variants 2, 3, 4, 5, 6, 10, 12, 15, 16, 17, 18, 19, 20, 22, 23, 25, 27, and 28 all encode the same isoform (2).
      Source sequence(s)
      AI741398, AJ311395, DA391124, DA549753, EF100447
      Consensus CDS
      CCDS5202.1
      UniProtKB/Swiss-Prot
      B2RBA4, B2RCM8, E1P595, E1P597, O76019, Q7Z3V8, Q92981, Q96JR9, Q9UIZ0, Q9UM63
      Conserved Domains (3) summary
      COG5189
      Location:29109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:626
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      143940300..144064599 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      145132991..145257328 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_002656.3: Suppressed sequence

      Description
      NM_002656.3: This RefSeq was removed because currently there is insufficient support for the transcript.