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    Tspyl2 TSPY-like 2 [ Mus musculus (house mouse) ]

    Gene ID: 52808, updated on 23-Jun-2021

    Summary

    Official Symbol
    Tspyl2provided by MGI
    Official Full Name
    TSPY-like 2provided by MGI
    Primary source
    MGI:MGI:106244
    See related
    Ensembl:ENSMUSG00000041096
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C; CDA1; DENT; CINAP; DENTT; DXHXS1008; DXBwg1396e; DXHXS1008E; E130307F10Rik
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 34.8), frontal lobe adult (RPKM 34.3) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Tspyl2 in Genome Data Viewer
    Location:
    X F3; X 68.46 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (151119847..151125480, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (152336851..152342484, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (148771395..148777027, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene lysine (K)-specific demethylase 5C Neighboring gene Kdm5c adjacent non-coding transcript Neighboring gene G-protein coupled receptor 173 Neighboring gene RIKEN cDNA 3010001F23 gene Neighboring gene actin, beta pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC40973

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables chromatin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within chromatin organization IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of DNA replication ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of cell growth ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of protein kinase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    testis-specific Y-encoded-like protein 2
    Names
    CASK interacting nucleosome assembly protein
    TSPY-like protein 2
    cell division autoantigen 1 nucleolar protein
    differentially expressed nucleolar TGF-beta1 target
    nucleolar TGF-beta1 target protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001358369.1NP_001345298.1  testis-specific Y-encoded-like protein 2 isoform c

      Status: VALIDATED

      Source sequence(s)
      AL731727, AW046203
      Related
      ENSMUST00000138918.8
      Conserved Domains (1) summary
      pfam00956
      Location:209388
      NAP; Nucleosome assembly protein (NAP)
    2. NM_029836.4NP_084112.1  testis-specific Y-encoded-like protein 2 isoform a

      See identical proteins and their annotated locations for NP_084112.1

      Status: VALIDATED

      Source sequence(s)
      AW046203, BC054393, BY008032, CJ066847
      Consensus CDS
      CCDS30474.1
      UniProtKB/Swiss-Prot
      Q7TQI8
      Related
      ENSMUSP00000046782.7, ENSMUST00000044509.7
      Conserved Domains (1) summary
      cl08298
      Location:209388
      NAP; Nucleosome assembly protein (NAP)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      151119847..151125480 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_145936.3: Suppressed sequence

      Description
      NM_145936.3: This RefSeq was permanently suppressed because it is a nonsense-mediated decay (NMD) candidate.
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