Format

Send to:

Choose Destination
    • Showing Current items.

    Slc52a2 solute carrier protein 52, member 2 [ Mus musculus (house mouse) ]

    Gene ID: 52710, updated on 23-Jun-2021

    Summary

    Official Symbol
    Slc52a2provided by MGI
    Official Full Name
    solute carrier protein 52, member 2provided by MGI
    Primary source
    MGI:MGI:1289288
    See related
    Ensembl:ENSMUSG00000022560
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    P; PAR2; RFT1; Gpr17; Rfvt2; mRFT1; GPCR42; Gpr172b; D15Ertd747; D15Ertd747e; 2010003P03Rik
    Expression
    Ubiquitous expression in duodenum adult (RPKM 16.9), small intestine adult (RPKM 12.6) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Slc52a2 in Genome Data Viewer
    Location:
    15 D3; 15 36.04 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (76422994..76432078)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (76538814..76547878)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (76369373..76372560)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 249 Neighboring gene F-box and leucine-rich repeat protein 6 Neighboring gene predicted gene, 35739 Neighboring gene aarF domain containing kinase 5 Neighboring gene cleavage and polyadenylation specific factor 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (3) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables 4-hydroxybutyrate receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables riboflavin transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables riboflavin transmembrane transporter activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in riboflavin transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in riboflavin transport ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in integral component of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in integral component of plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    solute carrier family 52, riboflavin transporter, member 2
    Names
    G protein-coupled receptor 172B
    PERV-A receptor 2 homolog
    porcine endogenous retrovirus A receptor 2 homolog
    riboflavin transporter 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029643.4NP_083919.1  solute carrier family 52, riboflavin transporter, member 2 precursor

      See identical proteins and their annotated locations for NP_083919.1

      Status: VALIDATED

      Source sequence(s)
      AC157566, AK029579, BY148057
      Consensus CDS
      CCDS27575.1
      UniProtKB/Swiss-Prot
      Q9D8F3
      Related
      ENSMUSP00000023220.9, ENSMUST00000023220.10
      Conserved Domains (1) summary
      pfam06237
      Location:282376
      DUF1011; Protein of unknown function (DUF1011)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      76422994..76432078
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006521151.5XP_006521214.1  solute carrier family 52, riboflavin transporter, member 2 isoform X1

      See identical proteins and their annotated locations for XP_006521214.1

      UniProtKB/Swiss-Prot
      Q9D8F3
      Conserved Domains (1) summary
      pfam06237
      Location:282376
      DUF1011; Protein of unknown function (DUF1011)

    RNA

    1. XR_004938852.1 RNA Sequence

    Support Center