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    Zfp410 zinc finger protein 410 [ Mus musculus (house mouse) ]

    Gene ID: 52708, updated on 16-Oct-2021

    Summary

    Official Symbol
    Zfp410provided by MGI
    Official Full Name
    zinc finger protein 410provided by MGI
    Primary source
    MGI:MGI:1289280
    See related
    Ensembl:ENSMUSG00000042472
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Apa1; Znf410; D12Ertd748e
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 7.5), CNS E14 (RPKM 5.7) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Zfp410 in Genome Data Viewer
    Location:
    12 D1; 12 39.15 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (84363594..84391213)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (84316510..84344439)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (85658080..85684674)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit pseudogene Neighboring gene prostaglandin reductase 2 Neighboring gene LSM6 homolog, U6 small nuclear RNA associated pseudogene Neighboring gene family with sequence similarity 161, member B Neighboring gene coenzyme Q6 monooxygenase Neighboring gene ectonucleoside triphosphate diphosphohydrolase 5 Neighboring gene basal body orientation factor 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Clone Names

    • MGC38535

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables sequence-specific double-stranded DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    zinc finger protein 410
    Names
    another partner for ARF 1
    zinc finger protein APA-1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252582.2NP_001239511.1  zinc finger protein 410 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AI449605, AK033090, AK051939, BB657543, CK791111, DT918547
      Consensus CDS
      CCDS88369.1
      UniProtKB/Swiss-Prot
      Q8BKX7
      Related
      ENSMUSP00000152441.2, ENSMUST00000222258.2
      Conserved Domains (3) summary
      sd00017
      Location:251273
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:266292
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:251334
      zf-C2H2_8; C2H2-type zinc ribbon
    2. NM_001252583.1NP_001239512.1  zinc finger protein 410 isoform 3

      See identical proteins and their annotated locations for NP_001239512.1

      Status: VALIDATED

      Source sequence(s)
      BB466060, BC052080, CK791111
      Consensus CDS
      CCDS88368.1
      UniProtKB/Swiss-Prot
      Q8BKX7
      Related
      ENSMUSP00000152098.2, ENSMUST00000220931.2
      Conserved Domains (3) summary
      sd00017
      Location:251273
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:266292
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:251335
      zf-C2H2_8; C2H2-type zinc ribbon
    3. NM_001364223.1NP_001351152.1  zinc finger protein 410 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC159649
      Conserved Domains (2) summary
      sd00017
      Location:200220
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:198220
      zf-C2H2; Zinc finger, C2H2 type
    4. NM_144833.4NP_659082.1  zinc finger protein 410 isoform 1

      See identical proteins and their annotated locations for NP_659082.1

      Status: VALIDATED

      Source sequence(s)
      AC159649, AK051939, AK132345, CK791111
      Consensus CDS
      CCDS26042.1
      UniProtKB/Swiss-Prot
      Q8BKX7
      Related
      ENSMUSP00000045550.11, ENSMUST00000045931.12
      Conserved Domains (3) summary
      COG5189
      Location:189300
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:281303
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:325350
      zf-H2C2_2; Zinc-finger double domain

    RNA

    1. NR_045546.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC159649, AK051939, BC056957, CK791111
    2. NR_045615.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC159649, AK051939
    3. NR_157102.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC159649
    4. NR_157103.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC159649

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      84363594..84391213
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516087.5XP_006516150.1  zinc finger protein 410 isoform X2

      Conserved Domains (2) summary
      sd00017
      Location:200220
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:198220
      zf-C2H2; Zinc finger, C2H2 type
    2. XM_006516086.5XP_006516149.1  zinc finger protein 410 isoform X1

      See identical proteins and their annotated locations for XP_006516149.1

      UniProtKB/Swiss-Prot
      Q8BKX7
      Conserved Domains (3) summary
      COG5189
      Location:189300
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:281303
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:325350
      zf-H2C2_2; Zinc-finger double domain
    3. XM_006516085.4XP_006516148.1  zinc finger protein 410 isoform X1

      See identical proteins and their annotated locations for XP_006516148.1

      UniProtKB/Swiss-Prot
      Q8BKX7
      Conserved Domains (3) summary
      COG5189
      Location:189300
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:281303
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:325350
      zf-H2C2_2; Zinc-finger double domain
    4. XM_036157527.1XP_036013420.1  zinc finger protein 410 isoform X2

      Conserved Domains (2) summary
      sd00017
      Location:200220
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:198220
      zf-C2H2; Zinc finger, C2H2 type

    RNA

    1. XR_003950067.2 RNA Sequence

      Related
      ENSMUST00000222606.2
    2. XR_004937528.1 RNA Sequence

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