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    Krr1 KRR1, small subunit (SSU) processome component, homolog (yeast) [ Mus musculus (house mouse) ]

    Gene ID: 52705, updated on 5-Aug-2018

    Summary

    Official Symbol
    Krr1provided by MGI
    Official Full Name
    KRR1, small subunit (SSU) processome component, homolog (yeast)provided by MGI
    Primary source
    MGI:MGI:1289274
    See related
    Ensembl:ENSMUSG00000063334 Vega:OTTMUSG00000027781
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Hrb2; AI255219; AI428520; D10Ertd773e; 2610511F02Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 9.9), bladder adult (RPKM 6.8) and 24 other tissues See more
    Orthologs

    Genomic context

    See Krr1 in Genome Data Viewer
    Location:
    10 D2; 10 59.97 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (111972695..111988430)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (111409751..111425486)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene S-adenosylmethionine decarboxylase, pseudogene 3 pseudogene Neighboring gene predicted gene, 20758 Neighboring gene GLI pathogenesis-related 1 (glioma) Neighboring gene predicted gene, 46179 Neighboring gene calcyphosphine 2 pseudogene Neighboring gene GLI pathogenesis-related 1 like 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    rRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    intercellular bridge ISO
    Inferred from Sequence Orthology
    more info
     
    nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    KRR1 small subunit processome component homolog
    Names
    HIV-1 Rev binding protein 2
    HIV-1 Rev-binding protein 2 homolog
    KRR-R motif-containing protein 1
    KRR1, small subunit processome component

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178610.4NP_848725.2  KRR1 small subunit processome component homolog

      See identical proteins and their annotated locations for NP_848725.2

      Status: VALIDATED

      Source sequence(s)
      AC167231, AK041854, CD547185
      Consensus CDS
      CCDS24168.1
      UniProtKB/Swiss-Prot
      Q8BGA5
      Related
      ENSMUSP00000125746.1, OTTMUSP00000034824, ENSMUST00000163048.7, OTTMUST00000068758
      Conserved Domains (2) summary
      smart00322
      Location:157207
      KH; K homology RNA-binding domain
      COG1094
      Location:55240
      Krr1; rRNA processing protein Krr1/Pno1, contains KH domain [Translation, ribosomal structure and biogenesis]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      111972695..111988430
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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