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    Cisd1 CDGSH iron sulfur domain 1 [ Mus musculus (house mouse) ]

    Gene ID: 52637, updated on 19-Feb-2019

    Summary

    Official Symbol
    Cisd1provided by MGI
    Official Full Name
    CDGSH iron sulfur domain 1provided by MGI
    Primary source
    MGI:MGI:1261855
    See related
    Ensembl:ENSMUSG00000037710
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Zcd1; AU043990; AW743335; mitoNEET; D10Ertd214e
    Expression
    Ubiquitous expression in kidney adult (RPKM 115.7), liver adult (RPKM 78.6) and 27 other tissues See more
    Orthologs

    Genomic context

    See Cisd1 in Genome Data Viewer
    Location:
    10 B5.3; 10 36.88 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (71330494..71344849, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (70793242..70807597, complement)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene predicted gene 20609 Neighboring gene ribosomal protein L19, pseudogene 2 Neighboring gene inositol polyphosphate multikinase Neighboring gene proteolipid protein 2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1)  1 citation
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    • Adipogenesis genes, organism-specific biosystem (from WikiPathways)
      Adipogenesis genes, organism-specific biosystemThe different classes of factors involved in adipogenesis are shown. Adipogenesis is the process by which fat cells differentiate from predadipocytes to adipocytes (fat cells). Adipose tissue, compos...

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    2 iron, 2 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
     
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    iron ion binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    iron-sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    regulation of cellular respiration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasmic side of mitochondrial outer membrane ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrial outer membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondrion HDA PubMed 
    mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    CDGSH iron-sulfur domain-containing protein 1
    Names
    zinc finger, CDGSH-type domain 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_134007.4NP_598768.1  CDGSH iron-sulfur domain-containing protein 1

      See identical proteins and their annotated locations for NP_598768.1

      Status: PROVISIONAL

      Source sequence(s)
      AC153509, AC156270
      Consensus CDS
      CCDS23917.1
      UniProtKB/Swiss-Prot
      Q91WS0
      Related
      ENSMUSP00000043559.8, ENSMUST00000045887.8
      Conserved Domains (2) summary
      smart00704
      Location:5593
      ZnF_CDGSH; CDGSH-type zinc finger. Function unknown
      pfam10660
      Location:1241
      MitoNEET_N; Iron-containing outer mitochondrial membrane protein N-terminus

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      71330494..71344849 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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