Format

Send to:

Choose Destination
    • Showing Current items.

    Brms1l breast cancer metastasis-suppressor 1-like [ Mus musculus (house mouse) ]

    Gene ID: 52592, updated on 31-Jan-2019

    Summary

    Official Symbol
    Brms1lprovided by MGI
    Official Full Name
    breast cancer metastasis-suppressor 1-likeprovided by MGI
    Primary source
    MGI:MGI:1196337
    See related
    Ensembl:ENSMUSG00000012076
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BRMS1; AI159718; D12Ertd407e; 0710008O11Rik
    Expression
    Broad expression in CNS E18 (RPKM 23.2), frontal lobe adult (RPKM 20.6) and 24 other tissues See more
    Orthologs

    Genomic context

    See Brms1l in Genome Data Viewer
    Location:
    12 C1; 12 24.18 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (55836226..55869736)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (56937353..56970722)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene Ral GTPase activating protein, alpha subunit 1 Neighboring gene insulinoma-associated 2 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene Mybbp1a pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    contributes_to histone deacetylase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    histone deacetylase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    histone deacetylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    negative regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of growth IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Sin3-type complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    breast cancer metastasis-suppressor 1-like protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037756.3NP_001032845.1  breast cancer metastasis-suppressor 1-like protein

      See identical proteins and their annotated locations for NP_001032845.1

      Status: VALIDATED

      Source sequence(s)
      AK155742, BC034885
      Consensus CDS
      CCDS36453.1
      UniProtKB/Swiss-Prot
      Q3U1T3
      Related
      ENSMUSP00000082500.4, ENSMUST00000059250.7
      Conserved Domains (1) summary
      pfam08598
      Location:61179
      Sds3; Sds3-like

    RNA

    1. NR_155205.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC159624, CR974464

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      55836226..55869736
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_381530.3 RNA Sequence

    2. XR_381529.3 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_027867.2: Suppressed sequence

      Description
      NM_027867.2: This RefSeq was permanently suppressed because it is a nonsense-mediated decay (NMD) candidate.
    Support Center