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    Carhsp1 calcium regulated heat stable protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 52502, updated on 23-Jun-2021

    Summary

    Official Symbol
    Carhsp1provided by MGI
    Official Full Name
    calcium regulated heat stable protein 1provided by MGI
    Primary source
    MGI:MGI:1196368
    See related
    Ensembl:ENSMUSG00000008393
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Crhsp-24; D16Ertd465; D16Ertd465e; 1200011K09Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 133.4), ovary adult (RPKM 91.2) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Carhsp1 in Genome Data Viewer
    Location:
    16 A1; 16 4.26 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (8476444..8490017, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (8658580..8672153, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (8658680..8672246, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene ferritin light chain 2 pseudogene Neighboring gene transmembrane protein 186 Neighboring gene phosphomannomutase 2 Neighboring gene predicted gene 5767 Neighboring gene ubiquitin specific peptidase 7 Neighboring gene predicted gene, 25805

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC101919

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables mRNA 3'-UTR binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables mRNA 3'-UTR binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in regulation of mRNA stability IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in regulation of mRNA stability IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in P granule IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    part_of cytoplasmic exosome (RNase complex) IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    calcium-regulated heat stable protein 1
    Names
    calcineurin substrate CRHSP-24
    calcium-regulated heat-stable protein of 24 kDa

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025821.2NP_080097.1  calcium-regulated heat stable protein 1

      See identical proteins and their annotated locations for NP_080097.1

      Status: PROVISIONAL

      Source sequence(s)
      AK004711
      Consensus CDS
      CCDS27942.1
      UniProtKB/Swiss-Prot
      Q9CR86
      UniProtKB/TrEMBL
      Q5M9P7
      Related
      ENSMUSP00000008537.9, ENSMUST00000008537.10
      Conserved Domains (1) summary
      cd04458
      Location:64129
      CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      8476444..8490017 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006522347.3XP_006522410.1  calcium-regulated heat stable protein 1 isoform X2

      Conserved Domains (1) summary
      cd04458
      Location:90155
      CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
    2. XM_006522348.5XP_006522411.1  calcium-regulated heat stable protein 1 isoform X3

      Conserved Domains (1) summary
      cd04458
      Location:84149
      CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
    3. XM_006522346.4XP_006522409.2  calcium-regulated heat stable protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006522409.2

      UniProtKB/Swiss-Prot
      Q9CR86
      UniProtKB/TrEMBL
      Q5M9P7
      Conserved Domains (1) summary
      cd04458
      Location:64129
      CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
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