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    Mrpl48 mitochondrial ribosomal protein L48 [ Mus musculus (house mouse) ]

    Gene ID: 52443, updated on 12-Aug-2018

    Summary

    Official Symbol
    Mrpl48provided by MGI
    Official Full Name
    mitochondrial ribosomal protein L48provided by MGI
    Primary source
    MGI:MGI:1289321
    See related
    Ensembl:ENSMUSG00000030706 Vega:OTTMUSG00000025231
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    L48mt; CGI-118; MRP-L48; D4Ertd786e; 1810030E20Rik; 2610028L11Rik
    Expression
    Ubiquitous expression in ovary adult (RPKM 26.8), cerebellum adult (RPKM 24.3) and 28 other tissues See more
    Orthologs

    Genomic context

    See Mrpl48 in Genome Data Viewer
    Location:
    7; 7 E2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (100549117..100607996, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (107697631..107756510, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 39059 Neighboring gene cytochrome c oxidase assembly factor 4 Neighboring gene cytochrome c oxidase assembly protein 20B Neighboring gene RAB6A, member RAS oncogene family Neighboring gene pleckstrin homology domain containing, family B (evectins) member 1 Neighboring gene predicted gene, 35082

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    mitochondrial large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrial ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mitochondrial ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrion HDA PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    39S ribosomal protein L48, mitochondrial

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198831.3NP_942128.2  39S ribosomal protein L48, mitochondrial isoform 1 precursor

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the protein-coding variant.
      Source sequence(s)
      AC117215
      Consensus CDS
      CCDS21502.2
      UniProtKB/Swiss-Prot
      Q8JZS9
      UniProtKB/TrEMBL
      E9QPQ8
      Related
      ENSMUSP00000116090.1, OTTMUSP00000030572, ENSMUST00000150042.7
      Conserved Domains (2) summary
      smart00487
      Location:132194
      DEXDc; DEAD-like helicases superfamily
      pfam00338
      Location:91185
      Ribosomal_S10; Ribosomal protein S10p/S20e

    RNA

    1. NR_003559.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC117215, AC124531
    2. NR_153424.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC117215, AC124531
    3. NR_153425.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC117215, AC124531
    4. NR_153426.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC117215
    5. NR_153427.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC117215
    6. NR_153428.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC117215

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      100549117..100607996 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017322353.1XP_017177842.1  39S ribosomal protein L48, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A140LHT6
      Related
      ENSMUSP00000146539.1, OTTMUSP00000075799, ENSMUST00000146003.8, OTTMUST00000062104
      Conserved Domains (2) summary
      smart00487
      Location:3496
      DEXDc; DEAD-like helicases superfamily
      pfam00338
      Location:187
      Ribosomal_S10; Ribosomal protein S10p/S20e
    2. XM_017322355.1XP_017177844.1  39S ribosomal protein L48, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A140LHT6
      Conserved Domains (2) summary
      smart00487
      Location:3496
      DEXDc; DEAD-like helicases superfamily
      pfam00338
      Location:187
      Ribosomal_S10; Ribosomal protein S10p/S20e
    3. XM_017322356.1XP_017177845.1  39S ribosomal protein L48, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A140LHT6
      Conserved Domains (2) summary
      smart00487
      Location:3496
      DEXDc; DEAD-like helicases superfamily
      pfam00338
      Location:187
      Ribosomal_S10; Ribosomal protein S10p/S20e
    4. XM_006508021.3XP_006508084.1  39S ribosomal protein L48, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A140LHT6
      Conserved Domains (2) summary
      smart00487
      Location:3496
      DEXDc; DEAD-like helicases superfamily
      pfam00338
      Location:187
      Ribosomal_S10; Ribosomal protein S10p/S20e
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