Format

Send to:

Choose Destination
    • Showing Current items.

    Ccdc97 coiled-coil domain containing 97 [ Mus musculus (house mouse) ]

    Gene ID: 52132, updated on 10-Feb-2019

    Summary

    Official Symbol
    Ccdc97provided by MGI
    Official Full Name
    coiled-coil domain containing 97provided by MGI
    Primary source
    MGI:MGI:1196455
    See related
    Ensembl:ENSMUSG00000002608
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA545218; D7Ertd462e; 1200014H14Rik; 2810446P04Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 35.1), ovary adult (RPKM 33.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ccdc97 in Genome Data Viewer
    Location:
    7 A3; 7 13.99 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (25711112..25719819, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (26496136..26504072, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene B9 protein domain 2 Neighboring gene transforming growth factor, beta 1 Neighboring gene heterogeneous nuclear ribonucleoprotein U-like 1 Neighboring gene AXL receptor tyrosine kinase

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 97

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368381.1NP_001355310.1  coiled-coil domain-containing protein 97 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC162614
    2. NM_001368382.1NP_001355311.1  coiled-coil domain-containing protein 97 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC162614
    3. NM_001368383.1NP_001355312.1  coiled-coil domain-containing protein 97 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC162614
    4. NM_001368384.1NP_001355313.1  coiled-coil domain-containing protein 97 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC162614
    5. NM_028771.3NP_083047.1  coiled-coil domain-containing protein 97 isoform 1

      See identical proteins and their annotated locations for NP_083047.1

      Status: VALIDATED

      Source sequence(s)
      AC162614
      Consensus CDS
      CCDS20994.1
      UniProtKB/Swiss-Prot
      Q9DBT3
      Related
      ENSMUSP00000002683.2, ENSMUST00000002683.2
      Conserved Domains (1) summary
      pfam09747
      Location:159326
      DUF2052; Coiled-coil domain containing protein (DUF2052)

    RNA

    1. NR_160796.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC162614

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      25711112..25719819 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006540173.3XP_006540236.1  coiled-coil domain-containing protein 97 isoform X3

      Conserved Domains (1) summary
      pfam09747
      Location:94261
      DUF2052; Coiled-coil domain containing protein (DUF2052)
    2. XM_006540174.3XP_006540237.1  coiled-coil domain-containing protein 97 isoform X3

      Conserved Domains (1) summary
      pfam09747
      Location:94261
      DUF2052; Coiled-coil domain containing protein (DUF2052)
    3. XM_011250626.2XP_011248928.1  coiled-coil domain-containing protein 97 isoform X3

      Conserved Domains (1) summary
      pfam09747
      Location:94261
      DUF2052; Coiled-coil domain containing protein (DUF2052)
    4. XM_011250624.1XP_011248926.1  coiled-coil domain-containing protein 97 isoform X1

      Conserved Domains (1) summary
      pfam09747
      Location:151318
      DUF2052; Coiled-coil domain containing protein (DUF2052)
    5. XM_011250625.2XP_011248927.1  coiled-coil domain-containing protein 97 isoform X2

      Conserved Domains (1) summary
      pfam09747
      Location:159300
      DUF2052; Coiled-coil domain containing protein (DUF2052)
    Support Center