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    R3hcc1l R3H domain and coiled-coil containing 1 like [ Mus musculus (house mouse) ]

    Gene ID: 52013, updated on 9-Sep-2018

    Summary

    Official Symbol
    R3hcc1lprovided by MGI
    Official Full Name
    R3H domain and coiled-coil containing 1 likeprovided by MGI
    Primary source
    MGI:MGI:1196316
    See related
    Ensembl:ENSMUSG00000025184 Vega:OTTMUSG00000035132
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    GIDRP86; Gidrp88; AI450607; C10orf28; D19Ertd386e; 1700036B12Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 6.2), bladder adult (RPKM 4.3) and 28 other tissues See more
    Orthologs

    Genomic context

    See R3hcc1l in Genome Data Viewer
    Location:
    19 C3; 19 36.47 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (42518315..42592274)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (42593295..42666746)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41850 Neighboring gene predicted gene, 41851 Neighboring gene lysyl oxidase-like 4 Neighboring gene pyridine nucleotide-disulphide oxidoreductase domain 2 Neighboring gene uncharacterized LOC102637646

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    colocalizes_with exon-exon junction complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    colocalizes_with exon-exon junction complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein R3HCC1L
    Names
    growth inhibition and differentiation related protein 86
    growth inhibition and differentiation-related protein 88 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177464.4NP_803415.1  coiled-coil domain-containing protein R3HCC1L

      See identical proteins and their annotated locations for NP_803415.1

      Status: PROVISIONAL

      Source sequence(s)
      AC124552
      Consensus CDS
      CCDS29829.1
      UniProtKB/Swiss-Prot
      Q8BJM3
      Related
      ENSMUSP00000026188.3, OTTMUSP00000048874, ENSMUST00000026188.9, OTTMUST00000089429
      Conserved Domains (1) summary
      cd12428
      Location:627691
      RRM_PARN; RNA recognition motif in poly(A)-specific ribonuclease PARN and similar proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      42518315..42592274
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006527182.3XP_006527245.1  coiled-coil domain-containing protein R3HCC1L isoform X1

      Conserved Domains (2) summary
      pfam11894
      Location:76132
      Nup192; Nuclear pore complex scaffold, nucleoporins 186/192/205
      cl17169
      Location:107171
      RRM_SF; RNA recognition motif (RRM) superfamily
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