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    ANKRD39 ankyrin repeat domain 39 [ Homo sapiens (human) ]

    Gene ID: 51239, updated on 23-Nov-2021

    Summary

    Official Symbol
    ANKRD39provided by HGNC
    Official Full Name
    ankyrin repeat domain 39provided by HGNC
    Primary source
    HGNC:HGNC:28640
    See related
    Ensembl:ENSG00000213337
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in brain (RPKM 6.7), adrenal (RPKM 6.0) and 25 other tissues See more
    Orthologs
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    Genomic context

    See ANKRD39 in Genome Data Viewer
    Location:
    2q11.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (96847990..96858016, complement)
    105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (97513727..97523753, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 3 Neighboring gene ankyrin repeat domain 23 Neighboring gene semaphorin 4C Neighboring gene family with sequence similarity 178 member B Neighboring gene Sharpr-MPRA regulatory region 12522

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC41816

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    contributes_to ubiquitin-protein transferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in protein K6-linked ubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of BRCA1-A complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of BRCA1-BARD1 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    ankyrin repeat domain-containing protein 39

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_016466.6NP_057550.3  ankyrin repeat domain-containing protein 39

      See identical proteins and their annotated locations for NP_057550.3

      Status: VALIDATED

      Source sequence(s)
      BU626151, BX091421, DA769410
      Consensus CDS
      CCDS2028.1
      UniProtKB/Swiss-Prot
      Q53RE8
      Related
      ENSP00000377170.4, ENST00000393537.5
      Conserved Domains (3) summary
      sd00045
      Location:6494
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:3584
      Ank_4; Ankyrin repeats (many copies)
      pfam12796
      Location:68152
      Ank_2; Ankyrin repeats (3 copies)

    RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

      Range
      96847990..96858016 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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