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    Pdcd7 programmed cell death 7 [ Mus musculus (house mouse) ]

    Gene ID: 50996, updated on 23-Jun-2021

    Summary

    Official Symbol
    Pdcd7provided by MGI
    Official Full Name
    programmed cell death 7provided by MGI
    Primary source
    MGI:MGI:1859170
    See related
    Ensembl:ENSMUSG00000041837
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ES1; ES18; C80112
    Expression
    Ubiquitous expression in adrenal adult (RPKM 12.0), ovary adult (RPKM 11.7) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Pdcd7 in Genome Data Viewer
    Location:
    9; 9 C
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (65253350..65266925)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (65346068..65359643)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (65193875..65207450)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene 16218 Neighboring gene caseinolytic mitochondrial matrix peptidase chaperone subunit Neighboring gene predicted gene, 19219 Neighboring gene ubiquitin-associated protein 1-like Neighboring gene predicted gene, 17875 Neighboring gene kelch repeat and BTB (POZ) domain containing 13

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    part_of U12-type spliceosomal complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    programmed cell death protein 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_016688.2NP_057897.2  programmed cell death protein 7

      See identical proteins and their annotated locations for NP_057897.2

      Status: VALIDATED

      Source sequence(s)
      AC114645, BE946822, BU518553, DV656988
      Consensus CDS
      CCDS40670.1
      UniProtKB/TrEMBL
      Q3U2X6
      Related
      ENSMUSP00000035515.3, ENSMUST00000048184.4
      Conserved Domains (1) summary
      pfam16021
      Location:168481
      PDCD7; Programmed cell death protein 7

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      65253350..65266925
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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