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    Hnrnpdl heterogeneous nuclear ribonucleoprotein D-like [ Mus musculus (house mouse) ]

    Gene ID: 50926, updated on 16-Oct-2021

    Summary

    Official Symbol
    Hnrnpdlprovided by MGI
    Official Full Name
    heterogeneous nuclear ribonucleoprotein D-likeprovided by MGI
    Primary source
    MGI:MGI:1355299
    See related
    Ensembl:ENSMUSG00000029328
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    JKTBP; Hnrpdl; AA407431; AA959857; Hnrnpdl1; hnRNP DL; hnRNP-DL; D5Wsu145e; D5Ertd650e
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 88.2), CNS E14 (RPKM 86.7) and 27 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Hnrnpdl in Genome Data Viewer
    Location:
    5 E4; 5 48.46 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (100181436..100187769, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (100033577..100039936, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (100462596..100468241, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein D Neighboring gene RIKEN cDNA 4930524J08 gene Neighboring gene predicted gene, 42127 Neighboring gene enolase-phosphatase 1 Neighboring gene transmembrane protein 150C, opposite strand Neighboring gene transmembrane protein 150C Neighboring gene predicted gene, 36167

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    enables double-stranded DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables poly(A) binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables poly(A) binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables poly(G) binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables poly(G) binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables single-stranded DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA metabolic process ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    involved_in regulation of gene expression IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    heterogeneous nuclear ribonucleoprotein D-like
    Names
    JKT41-binding protein
    hnRNP D-like
    hnRPD-like protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_016690.4NP_057899.2  heterogeneous nuclear ribonucleoprotein D-like

      See identical proteins and their annotated locations for NP_057899.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is the protein-coding transcript.
      Source sequence(s)
      BM950445, BQ174478, CF952137, CX219512, DV661776
      Consensus CDS
      CCDS19460.2
      UniProtKB/TrEMBL
      D3YTQ3
      Related
      ENSMUSP00000121005.2, ENSMUST00000128187.8
      Conserved Domains (2) summary
      cd12585
      Location:234308
      RRM2_hnRPDL; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein D-like (hnRNP DL) and similar proteins
      cd12758
      Location:149224
      RRM1_hnRPDL; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein D-like (hnRNP D-like or hnRNP DL) and similar proteins

    RNA

    1. NR_152866.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate exon in the 3' end compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AC124480

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      100181436..100187769 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006535077.5XP_006535140.1  heterogeneous nuclear ribonucleoprotein D-like isoform X2

      See identical proteins and their annotated locations for XP_006535140.1

      Conserved Domains (2) summary
      cd12585
      Location:234308
      RRM2_hnRPDL; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein D-like (hnRNP DL) and similar proteins
      cd12758
      Location:149224
      RRM1_hnRPDL; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein D-like (hnRNP D-like or hnRNP DL) and similar proteins
    2. XM_030254661.2XP_030110521.1  heterogeneous nuclear ribonucleoprotein D-like isoform X2

      Conserved Domains (2) summary
      cd12585
      Location:234308
      RRM2_hnRPDL; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein D-like (hnRNP DL) and similar proteins
      cd12758
      Location:149224
      RRM1_hnRPDL; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein D-like (hnRNP D-like or hnRNP DL) and similar proteins
    3. XM_006535076.5XP_006535139.1  heterogeneous nuclear ribonucleoprotein D-like isoform X2

      See identical proteins and their annotated locations for XP_006535139.1

      Conserved Domains (2) summary
      cd12585
      Location:234308
      RRM2_hnRPDL; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein D-like (hnRNP DL) and similar proteins
      cd12758
      Location:149224
      RRM1_hnRPDL; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein D-like (hnRNP D-like or hnRNP DL) and similar proteins
    4. XM_006535074.4XP_006535137.1  heterogeneous nuclear ribonucleoprotein D-like isoform X1

      See identical proteins and their annotated locations for XP_006535137.1

      UniProtKB/TrEMBL
      D3YTQ3
      Related
      ENSMUSP00000084114.5, ENSMUST00000086900.11
      Conserved Domains (2) summary
      cd12585
      Location:234308
      RRM2_hnRPDL; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein D-like (hnRNP DL) and similar proteins
      cd12758
      Location:149224
      RRM1_hnRPDL; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein D-like (hnRNP D-like or hnRNP DL) and similar proteins
    5. XM_036165266.1XP_036021159.1  heterogeneous nuclear ribonucleoprotein D-like isoform X3

      Related
      ENSMUSP00000118555.2, ENSMUST00000153442.8
      Conserved Domains (2) summary
      cd12585
      Location:85159
      RRM2_hnRPDL; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein D-like (hnRNP DL) and similar proteins
      cd12758
      Location:175
      RRM1_hnRPDL; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein D-like (hnRNP D-like or hnRNP DL) and similar proteins
    6. XM_036165267.1XP_036021160.1  heterogeneous nuclear ribonucleoprotein D-like isoform X3

      Conserved Domains (2) summary
      cd12585
      Location:85159
      RRM2_hnRPDL; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein D-like (hnRNP DL) and similar proteins
      cd12758
      Location:175
      RRM1_hnRPDL; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein D-like (hnRNP D-like or hnRNP DL) and similar proteins

    RNA

    1. XR_003955673.2 RNA Sequence

    2. XR_004942537.1 RNA Sequence

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