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    Hs6st1 heparan sulfate 6-O-sulfotransferase 1 [ Mus musculus (house mouse) ]

    Gene ID: 50785, updated on 6-Jul-2021

    Summary

    Official Symbol
    Hs6st1provided by MGI
    Official Full Name
    heparan sulfate 6-O-sulfotransferase 1provided by MGI
    Primary source
    MGI:MGI:1354958
    See related
    Ensembl:ENSMUSG00000045216
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    6OS; 6Ost1
    Expression
    Ubiquitous expression in adrenal adult (RPKM 91.8), kidney adult (RPKM 52.1) and 27 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Hs6st1 in Genome Data Viewer
    Location:
    1; 1 B
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (36107481..36145527)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (36068400..36106446)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (36125245..36163291)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39623 Neighboring gene predicted gene, 39624 Neighboring gene predicted gene, 53548 Neighboring gene predicted gene, 33280 Neighboring gene microRNA 6897 Neighboring gene UDP-glucose glycoprotein glucosyltransferase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    General protein information

    Preferred Names
    heparan-sulfate 6-O-sulfotransferase 1
    Names
    HS6ST-1
    mHS6ST-1
    NP_056633.2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_015818.2NP_056633.2  heparan-sulfate 6-O-sulfotransferase 1

      See identical proteins and their annotated locations for NP_056633.2

      Status: VALIDATED

      Source sequence(s)
      AI182294, BC052316
      Consensus CDS
      CCDS48237.1
      UniProtKB/Swiss-Prot
      Q9QYK5
      Related
      ENSMUSP00000085499.4, ENSMUST00000088174.4
      Conserved Domains (2) summary
      pfam03567
      Location:85350
      Sulfotransfer_2; Sulfotransferase family
      pfam14878
      Location:328402
      DLD; Death-like domain of SPT6

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      36107481..36145527
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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