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    Zdhhc18 zinc finger, DHHC domain containing 18 [ Mus musculus (house mouse) ]

    Gene ID: 503610, updated on 9-Sep-2018

    Summary

    Official Symbol
    Zdhhc18provided by MGI
    Official Full Name
    zinc finger, DHHC domain containing 18provided by MGI
    Primary source
    MGI:MGI:3527792
    See related
    Ensembl:ENSMUSG00000037553 Vega:OTTMUSG00000011205
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in spleen adult (RPKM 53.1), thymus adult (RPKM 41.2) and 23 other tissues See more
    Orthologs

    Genomic context

    See Zdhhc18 in Genome Data Viewer
    Location:
    4; 4 D2.3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (133604656..133633480, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (133162907..133189344, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 42324 Neighboring gene stratifin Neighboring gene predicted gene 13213 Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class V

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    palmitoyltransferase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    palmitoyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    protein-cysteine S-palmitoyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity, transferring acyl groups IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cellular protein localization IDA
    Inferred from Direct Assay
    more info
    PubMed 
    peptidyl-L-cysteine S-palmitoylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein palmitoylation ISO
    Inferred from Sequence Orthology
    more info
     
    protein targeting to membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    palmitoyltransferase ZDHHC18
    Names
    DHHC-18
    zinc finger DHHC domain-containing protein 18
    NP_001017968.2
    XP_006539081.1
    XP_006539083.1
    XP_006539084.1
    XP_006539085.1
    XP_011248601.1
    XP_017175794.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017968.2NP_001017968.2  palmitoyltransferase ZDHHC18

      See identical proteins and their annotated locations for NP_001017968.2

      Status: VALIDATED

      Source sequence(s)
      AL627228, AY668950, BX537327, CJ049628
      Consensus CDS
      CCDS38906.1
      UniProtKB/Swiss-Prot
      Q5Y5T2
      Related
      ENSMUSP00000081260.4, OTTMUSP00000012025, ENSMUST00000084238.4, OTTMUST00000026289
      Conserved Domains (1) summary
      pfam01529
      Location:183306
      zf-DHHC; DHHC palmitoyltransferase

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      133604656..133633480 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017320305.1XP_017175794.1  palmitoyltransferase ZDHHC18 isoform X2

    2. XM_006539018.1XP_006539081.1  palmitoyltransferase ZDHHC18 isoform X1

      Conserved Domains (1) summary
      pfam01529
      Location:183306
      zf-DHHC; DHHC palmitoyltransferase
    3. XM_011250299.2XP_011248601.1  palmitoyltransferase ZDHHC18 isoform X4

      See identical proteins and their annotated locations for XP_011248601.1

      Conserved Domains (1) summary
      pfam01529
      Location:183306
      zf-DHHC; DHHC palmitoyltransferase
    4. XM_006539022.1XP_006539085.1  palmitoyltransferase ZDHHC18 isoform X4

      See identical proteins and their annotated locations for XP_006539085.1

      Conserved Domains (1) summary
      pfam01529
      Location:183306
      zf-DHHC; DHHC palmitoyltransferase
    5. XM_006539021.1XP_006539084.1  palmitoyltransferase ZDHHC18 isoform X3

      See identical proteins and their annotated locations for XP_006539084.1

      Conserved Domains (1) summary
      pfam01529
      Location:183306
      zf-DHHC; DHHC palmitoyltransferase
    6. XM_006539020.1XP_006539083.1  palmitoyltransferase ZDHHC18 isoform X3

      See identical proteins and their annotated locations for XP_006539083.1

      Conserved Domains (1) summary
      pfam01529
      Location:183306
      zf-DHHC; DHHC palmitoyltransferase

    RNA

    1. XR_390767.2 RNA Sequence

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