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    4930579F01Rik RIKEN cDNA 4930579F01 gene [ Mus musculus (house mouse) ]

    Gene ID: 67741, updated on 25-Sep-2017

    Summary

    Official Symbol
    4930579F01Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930579F01 geneprovided by MGI
    Primary source
    MGI:MGI:1914991
    See related
    Ensembl:ENSMUSG00000012042 Vega:OTTMUSG00000052806
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward testis adult (RPKM 21.2) See more
    Orthologs

    Genomic context

    See 4930579F01Rik in Genome Data Viewer
    Location:
    3; 3 G3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (138164078..138194240, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (137827099..137849677, complement)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene microsomal triglyceride transfer protein Neighboring gene tRNA methyltransferase 10A Neighboring gene RIKEN cDNA 0610031O16 gene Neighboring gene alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide Neighboring gene predicted gene, 40156

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C4orf17 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163385.1NP_001156857.1  uncharacterized protein C4orf17 homolog isoform 1

      Status: PREDICTED

      Description
      Transcript Variant: This variant (1) encodes the longer predicted protein (isoform 1).
      Source sequence(s)
      AC131122
      Consensus CDS
      CCDS51081.1
      UniProtKB/TrEMBL
      E9Q3L6
      Related
      ENSMUSP00000012186.4, OTTMUSP00000070504, ENSMUST00000012186.8, OTTMUST00000132162
      Conserved Domains (1) summary
      pfam15256
      Location:22200
      SPATIAL; SPATIAL
    2. NM_001163386.1NP_001156858.1  uncharacterized protein C4orf17 homolog isoform 2

      See identical proteins and their annotated locations for NP_001156858.1

      Status: PREDICTED

      Description
      Transcript Variant: This variant (2) uses an alternate first splice donor site and the predicted protein (isoform 2) initiates from an internal AUG compared to variant 1.
      Source sequence(s)
      AC131122
      Consensus CDS
      CCDS80031.1
      UniProtKB/TrEMBL
      A0A0G2JEX5
      Related
      ENSMUSP00000142940.1, OTTMUSP00000070505, ENSMUST00000199293.1, OTTMUST00000132163
      Conserved Domains (1) summary
      pfam15256
      Location:275
      SPATIAL; SPATIAL

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      138164078..138194240 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006501945.3XP_006502008.1  uncharacterized protein C4orf17 homolog isoform X1

      Conserved Domains (1) summary
      pfam15256
      Location:8202
      SPATIAL; SPATIAL
    2. XM_006501946.3XP_006502009.1  uncharacterized protein C4orf17 homolog isoform X2

      See identical proteins and their annotated locations for XP_006502009.1

      UniProtKB/TrEMBL
      A0A0G2JEX5
      Conserved Domains (1) summary
      pfam15256
      Location:275
      SPATIAL; SPATIAL
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