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    Prr27 proline rich 27 [ Mus musculus (house mouse) ]

    Gene ID: 73779, updated on 25-Sep-2017

    Summary

    Official Symbol
    Prr27provided by MGI
    Official Full Name
    proline rich 27provided by MGI
    Primary source
    MGI:MGI:1921029
    See related
    Ensembl:ENSMUSG00000002240 Vega:OTTMUSG00000054074
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930432K09Rik
    Expression
    Restricted expression toward testis adult (RPKM 64.4) See more
    Orthologs

    Genomic context

    See Prr27 in Genome Data Viewer
    Location:
    5 E1; 5 43.56 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (87825697..87846386)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (88254722..88275411)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene casein alpha s2-like A Neighboring gene casein alpha s2-like B Neighboring gene DAZ interacting protein 1 pseudogene Neighboring gene odontogenic, ameloblast asssociated

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Markers

    Clone Names

    • MGC118299

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163551.1NP_001157023.1  proline-rich protein 27 isoform 1 precursor

      See identical proteins and their annotated locations for NP_001157023.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC074046, AK015291, BY446468, BY714849
      Consensus CDS
      CCDS51535.1
      UniProtKB/TrEMBL
      Q3SYJ2, Q9D5J3
      Related
      ENSMUSP00000098617.1, OTTMUSP00000071267, ENSMUST00000101056.7, OTTMUST00000134375
      Conserved Domains (1) summary
      PRK14951
      Location:183320
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    2. NM_028648.3NP_082924.2  proline-rich protein 27 isoform 2 precursor

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an in-frame exon in the 5' coding region, compared to variant 1, which results in a shorter protein (isoform 2), compared to isoform 1.
      Source sequence(s)
      AK015291, BY446468, BY714849
      Consensus CDS
      CCDS39134.1
      UniProtKB/TrEMBL
      E9Q591, Q9D5J3
      Related
      ENSMUSP00000002310.6, OTTMUSP00000071268, ENSMUST00000002310.7, OTTMUST00000134376
      Conserved Domains (1) summary
      PRK14951
      Location:175312
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      87825697..87846386
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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