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    HNRNPCL2 heterogeneous nuclear ribonucleoprotein C like 2 [ Homo sapiens (human) ]

    Gene ID: 440563, updated on 27-Nov-2024

    Summary

    Official Symbol
    HNRNPCL2provided by HGNC
    Official Full Name
    heterogeneous nuclear ribonucleoprotein C like 2provided by HGNC
    Primary source
    HGNC:HGNC:48813
    See related
    Ensembl:ENSG00000275774 AllianceGenome:HGNC:48813
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HNRNPCP5
    Summary
    Enables identical protein binding activity. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See HNRNPCL2 in Genome Data Viewer
    Location:
    1p36.21
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (13115488..13116854, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (12628805..12630171)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (13182960..13184326, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene PRAME family member 34, pseudogene Neighboring gene PRAME family member 35, pseudogene Neighboring gene PRAME family member 36, pseudogene Neighboring gene PRAME family member 26

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    heterogeneous nuclear ribonucleoprotein C-like 2
    Names
    heterogeneous nuclear ribonucleoprotein C pseudogene 5
    hnRNP C-like-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001136561.3NP_001130033.3  heterogeneous nuclear ribonucleoprotein C-like 2

      See identical proteins and their annotated locations for NP_001130033.3

      Status: VALIDATED

      Source sequence(s)
      BC144551, BC157858
      Consensus CDS
      CCDS76105.1
      UniProtKB/Swiss-Prot
      B2RXH8, B7ZW41
      UniProtKB/TrEMBL
      A0A0G2JNQ3
      Related
      ENSP00000479203.2, ENST00000621994.3
      Conserved Domains (1) summary
      cd12341
      Location:1683
      RRM_hnRNPC_like; RNA recognition motif in heterogeneous nuclear ribonucleoprotein C (hnRNP C)-related proteins

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      13115488..13116854 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_012132914.1 Reference GRCh38.p14 PATCHES

      Range
      269828..271194 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_015495298.1 Reference GRCh38.p14 PATCHES

      Range
      111104..112470 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187517.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      61031..62397 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      12628805..12630171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)