Format

Send to:

Choose Destination
    • Showing Current items.

    sol small optic lobes [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 44014, updated on 8-Oct-2018

    Summary

    Official Symbol
    solprovided by FlyBase
    Official Full Name
    small optic lobesprovided by FlyBase
    Primary source
    FLYBASE:FBgn0003464
    Locus tag
    Dmel_CG1391
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster (old-lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CalpD; CG1391; Dmel\CG1391; DmSol; nofE; PC79; Sol; SOL; w5000

    Genomic context

    See sol in Genome Data Viewer
    Location:
    19F5-19F5; 1-65 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    Release 6.13 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (21350280..21357912)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (21221307..21228939)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene flightless I Neighboring gene dodo Neighboring gene penguin Neighboring gene Septin 1 Neighboring gene waclaw Neighboring gene bobby sox Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    calcium-dependent cysteine-type endopeptidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    calcium-dependent cysteine-type endopeptidase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    nervous system development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    proteolysis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    proteolysis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm NAS
    Non-traceable Author Statement
    more info
    PubMed 
    intracellular ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    small optic lobes
    Names
    CG1391-PA
    CG1391-PB
    CG1391-PE
    CG1391-PF
    small optic lobe
    sol-PA
    sol-PB
    sol-PE
    sol-PF
    NP_996524.2
    • non-AUG (UUG) translation initiation

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      21350280..21357912
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_057390.6NP_476738.3  small optic lobes, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_476738.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P27398
      Related
      FBpp0088620, FBtr0089678
      Conserved Domains (4) summary
      smart00230
      Location:10011328
      CysPc; Calpain-like thiol protease family
      sd00025
      Location:647667
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      sd00029
      Location:708727
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:927954
      zf-RanBP; Zn-finger in Ran binding protein and others
    2. NM_001169342.2NP_001162813.1  small optic lobes, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001162813.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      E1JJ98
      Related
      FBpp0290798, FBtr0301583
      Conserved Domains (4) summary
      smart00230
      Location:10001327
      CysPc; Calpain-like thiol protease family
      sd00025
      Location:647667
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      sd00029
      Location:707726
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:926953
      zf-RanBP; Zn-finger in Ran binding protein and others
    3. NM_057389.6NP_476737.3  small optic lobes, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_476737.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P27398
      Related
      FBpp0088621, FBtr0089679
      Conserved Domains (2) summary
      sd00029
      Location:1029
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:634
      zf-RanBP; Zn-finger in Ran binding protein and others
    4. NM_206801.3NP_996524.2  small optic lobes, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_996524.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P27398
      Related
      FBpp0312188, FBtr0346608
      Conserved Domains (4) summary
      smart00230
      Location:9221249
      CysPc; Calpain-like thiol protease family
      sd00025
      Location:568588
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      sd00029
      Location:629648
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:848875
      zf-RanBP; Zn-finger in Ran binding protein and others
    Support Center