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    Gm1965 predicted gene 1965 [ Mus musculus (house mouse) ]

    Gene ID: 434065, updated on 25-Sep-2017

    Summary

    Official Symbol
    Gm1965provided by MGI
    Official Full Name
    predicted gene 1965provided by MGI
    Primary source
    MGI:MGI:3584270
    See related
    Ensembl:ENSMUSG00000090254
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C86079; AU018164; AU021089; AU023851
    Expression
    Biased expression in ovary adult (RPKM 1.9), colon adult (RPKM 0.8) and 3 other tissues See more

    Genomic context

    See Gm1965 in Genome Data Viewer
    Location:
    6; 6 D1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (89140994..89147370)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (89090999..89096010)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 36639 Neighboring gene RIKEN cDNA 4933427D06 gene Neighboring gene uncharacterized LOC101056056 Neighboring gene predicted gene 839

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_121593.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AK136244, AK139519
      Related
      ENSMUST00000161362.7
    2. NR_121594.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in an internal exon, compared to variant 1.
      Source sequence(s)
      AK136090, AK136244
    3. NR_121595.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice site in an internal exon, compared to variant 1.
      Source sequence(s)
      AK136244, BC147526
      Related
      ENSMUST00000160361.2
    4. NR_121596.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks an internal exon, compared to variant 1.
      Source sequence(s)
      AK136244
      Related
      ENSMUST00000203378.1

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      89140994..89147370
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001033491.2: Suppressed sequence

      Description
      NM_001033491.2: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
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