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    Dnaaf5 dynein, axonemal assembly factor 5 [ Mus musculus (house mouse) ]

    Gene ID: 433956, updated on 5-Aug-2018

    Summary

    Official Symbol
    Dnaaf5provided by MGI
    Official Full Name
    dynein, axonemal assembly factor 5provided by MGI
    Primary source
    MGI:MGI:3616079
    See related
    Ensembl:ENSMUSG00000025857 Vega:OTTMUSG00000025148
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C76907; Heatr2; BC053401
    Expression
    Ubiquitous expression in adrenal adult (RPKM 20.8), ovary adult (RPKM 20.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Dnaaf5 in Genome Data Viewer
    Location:
    5; 5 G2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (139150223..139186505)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (139626177..139662459)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 38726 Neighboring gene platelet derived growth factor, alpha Neighboring gene protein kinase, cAMP dependent regulatory, type I beta Neighboring gene Sad1 and UNC84 domain containing 1 Neighboring gene golgi to ER traffic protein 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC60818

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    dynein intermediate chain binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    dynein intermediate chain binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    cell projection organization IEA
    Inferred from Electronic Annotation
    more info
     
    cilium movement IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cilium movement ISO
    Inferred from Sequence Orthology
    more info
     
    inner dynein arm assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    inner dynein arm assembly ISO
    Inferred from Sequence Orthology
    more info
     
    outer dynein arm assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    outer dynein arm assembly ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    NOT motile cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    dynein assembly factor 5, axonemal
    Names
    HEAT repeat-containing protein 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081265.2NP_001074734.1  dynein assembly factor 5, axonemal isoform 1

      See identical proteins and their annotated locations for NP_001074734.1

      Status: VALIDATED

      Source sequence(s)
      AC125065
      Consensus CDS
      CCDS39349.1
      UniProtKB/Swiss-Prot
      B9EJR8
      Related
      ENSMUSP00000026975.6, OTTMUSP00000030439, ENSMUST00000026975.10
      Conserved Domains (2) summary
      pfam13830
      Location:41198
      DUF4192; Domain of unknown function (DUF4192)
      sd00044
      Location:165193
      HEAT; HEAT repeat [structural motif]
    2. NM_001363485.1NP_001350414.1  dynein assembly factor 5, axonemal isoform 2

      Status: VALIDATED

      Source sequence(s)
      BC158066, BG228650, CK627764
      Conserved Domains (1) summary
      sd00044
      Location:405433
      HEAT; HEAT repeat [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      139150223..139186505
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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