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    Ankrd13c ankyrin repeat domain 13c [ Mus musculus (house mouse) ]

    Gene ID: 433667, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ankrd13cprovided by MGI
    Official Full Name
    ankyrin repeat domain 13cprovided by MGI
    Primary source
    MGI:MGI:2139746
    See related
    Ensembl:ENSMUSG00000039988
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI505652; AU022220
    Expression
    Ubiquitous expression in adrenal adult (RPKM 24.1), kidney adult (RPKM 16.5) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Ankrd13c in Genome Data Viewer
    Location:
    3; 3 H4
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (157650886..157713671)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (157945420..158008034)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (157610430..157669801)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene cystathionase (cystathionine gamma-lyase) Neighboring gene RIKEN cDNA 1810013D15 gene Neighboring gene serine and arginine-rich splicing factor 11 Neighboring gene leucine rich repeat containing 40

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables signaling receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables signaling receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in protein retention in ER lumen IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in protein retention in ER lumen ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of anoikis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of signaling receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    colocalizes_with endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    ankyrin repeat domain-containing protein 13C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013806.2NP_001013828.1  ankyrin repeat domain-containing protein 13C isoform 1

      See identical proteins and their annotated locations for NP_001013828.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC117211, AC145301, AI835245, AK135906, BC065088, BQ562764, CF736962
      Consensus CDS
      CCDS17933.1
      UniProtKB/Swiss-Prot
      Q3UX43
      Related
      ENSMUSP00000038662.9, ENSMUST00000040787.13
      Conserved Domains (4) summary
      cd00204
      Location:115199
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam11904
      Location:259532
      GPCR_chapero_1; GPCR-chaperone
      pfam13637
      Location:144197
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:115141
      ANK; ANK repeat [structural motif]
    2. NM_001359909.1NP_001346838.1  ankyrin repeat domain-containing protein 13C isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5'UTR and initiates translation at a downstream start codon, compared to variant (1). The encoded isoform (2) has a shorter N-terminus, compared to isoform (1).
      Source sequence(s)
      AC117211, AC145301, AI835245
      Conserved Domains (1) summary
      pfam11904
      Location:1263
      GPCR_chapero_1; GPCR-chaperone

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      157650886..157713671
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036163152.1XP_036019045.1  ankyrin repeat domain-containing protein 13C isoform X2

      Conserved Domains (1) summary
      pfam11904
      Location:17289
      GPCR_chapero_1; GPCR-chaperone
    2. XM_036163151.1XP_036019044.1  ankyrin repeat domain-containing protein 13C isoform X1

      Conserved Domains (3) summary
      sd00045
      Location:115141
      ANK; ANK repeat [structural motif]
      pfam11904
      Location:259302
      GPCR_chapero_1; GPCR-chaperone
      pfam12796
      Location:117199
      Ank_2; Ankyrin repeats (3 copies)

    RNA

    1. XR_004941350.1 RNA Sequence

    2. XR_003954348.2 RNA Sequence

    3. XR_004941351.1 RNA Sequence

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