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    CG17780 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42914, updated on 4-Apr-2024

    Summary

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    Official Symbol
    CG17780provided by FlyBase
    Primary source
    FLYBASE:FBgn0039197
    Locus tag
    Dmel_CG17780
    See related
    AllianceGenome:FB:FBgn0039197
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:RE41041; Dmel\CG17780
    Summary
    Is expressed in several structures, including embryonic/larval midgut; embryonic/larval visceral muscle cell; extended germ band embryo; presumptive embryonic/larval system; and visceral muscle primordium. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    96A1-96A1; 3-85 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (24382920..24385052, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (20208642..20210774, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene HDC15381 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chromosomal rearrangement inferred from comparisons of 12 Drosophila genomes. Bhutkar A, et al. Genetics, 2008 Jul. PMID 18622036, Free PMC Article
    2. Novel protein domains and repeats in Drosophila melanogaster: insights into structure, function, and evolution. Ponting CP, et al. Genome Res, 2001 Dec. PMID 11731489
    3. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article
    4. A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. Neely GG, et al. Cell, 2010 Nov 12. PMID 21074052, Free PMC Article
    5. Systematic genetic analysis of muscle morphogenesis and function in Drosophila. Schnorrer F, et al. Nature, 2010 Mar 11. PMID 20220848

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG17780-PA
    CG17780-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      24382920..24385052 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_143002.2 → NP_651259.1  uncharacterized protein Dmel_CG17780, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651259.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SXI0
      Related
      FBpp0084006
      Conserved Domains (1) summary
      cl11657
      Location:133 → 220
      DM4_12; DM4/DM12 family

    2. NM_170143.2 → NP_732995.1  uncharacterized protein Dmel_CG17780, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_732995.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VC78
      Related
      FBpp0084005
      Conserved Domains (2) summary
      smart00718
      Location:253 → 338
      DM4_12; DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function
      pfam07841
      Location:136 → 188
      DM4_12; DM4/DM12 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8SXI0 Q8SXI0
    Q9VC78 Q9VC78

    Gene LinkOut

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