U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    CG5902 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42839, updated on 4-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CG5902provided by FlyBase
    Primary source
    FLYBASE:FBgn0039136
    Locus tag
    Dmel_CG5902
    See related
    AllianceGenome:FB:FBgn0039136
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-WO0118547.372; Dmel\CG5902
    Summary
    Is expressed in organism. Human ortholog(s) of this gene implicated in midface hypoplasia, hearing impairment, elliptocytosis, and nephrocalcinosis. Orthologous to human AMMECR1 (AMMECR nuclear protein 1) and AMMECR1L (AMMECR1 like). [provided by Alliance of Genome Resources, Apr 2022]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CG5902 in Genome Data Viewer
    Location:
    95D4-95D5; 3-82 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (23986642..23988738)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (19812364..19814460)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene mimi Neighboring gene mir-9381 stem loop Neighboring gene uncharacterized protein Neighboring gene Ecdysteroid phosphate phosphatase Neighboring gene Rab7

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Systematic screening of a Drosophila ORF library in vivo uncovers Wnt/Wg pathway components. Schertel C, et al. Dev Cell, 2013 Apr 29. PMID 23583758
    2. Tissue-specific (ts)CRISPR as an efficient strategy for in vivo screening in Drosophila. Meltzer H, et al. Nat Commun, 2019 May 8. PMID 31068592, Free PMC Article
    3. Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach. Pazos Obregón F, et al. BMC Genomics, 2015 Sep 15. PMID 26370122, Free PMC Article
    4. A protein complex network of Drosophila melanogaster. Guruharsha KG, et al. Cell, 2011 Oct 28. PMID 22036573, Free PMC Article
    5. Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes. Hosono C, et al. Nat Cell Biol, 2015 Dec. PMID 26551273

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    Names
    CG5902-PA
    CG5902-PB
    CG5902-PC

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      23986642..23988738
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142944.4 → NP_651201.1  uncharacterized protein Dmel_CG5902, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651201.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4V3B3, Q9VCF0
      UniProtKB/TrEMBL
      E1JIV0
      Related
      FBpp0083890
      Conserved Domains (1) summary
      pfam01871
      Location:50 → 219
      AMMECR1; AMMECR1

    2. NM_001170234.2 → NP_001163705.1  uncharacterized protein Dmel_CG5902, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001163705.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4V3B3, Q9VCF0
      UniProtKB/TrEMBL
      E1JIV0
      Conserved Domains (1) summary
      pfam01871
      Location:50 → 219
      AMMECR1; AMMECR1

    3. NM_170106.4 → NP_732929.1  uncharacterized protein Dmel_CG5902, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_732929.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4V3B3, Q9VCF0
      UniProtKB/TrEMBL
      E1JIV0
      Related
      FBpp0083889
      Conserved Domains (1) summary
      pfam01871
      Location:50 → 219
      AMMECR1; AMMECR1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    E1JIV0 E1JIV0
    Q9VCF0.1 Q9VCF0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools