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    BC031181 cDNA sequence BC031181 [ Mus musculus (house mouse) ]

    Gene ID: 407819, updated on 23-Jun-2021

    Summary

    Official Symbol
    BC031181provided by MGI
    Official Full Name
    cDNA sequence BC031181provided by MGI
    Primary source
    MGI:MGI:3039614
    See related
    Ensembl:ENSMUSG00000036299
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in CNS E14 (RPKM 40.0), CNS E18 (RPKM 39.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See BC031181 in Genome Data Viewer
    Location:
    18; 18 E3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (75138910..75143006)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (75005839..75009935)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (75165554..75169587)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 23301 Neighboring gene predicted gene, 26202 Neighboring gene ribosomal protein L17 Neighboring gene dymeclin Neighboring gene predicted gene, 52344 Neighboring gene ATP synthase subunit d, mitochondrial pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in lipid droplet ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    UPF0729 protein C18orf32 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001181.4NP_001001181.1  UPF0729 protein C18orf32 homolog isoform 1

      See identical proteins and their annotated locations for NP_001001181.1

      Status: VALIDATED

      Source sequence(s)
      BC016084, BY129096, BY512913
      Consensus CDS
      CCDS37859.1
      UniProtKB/Swiss-Prot
      Q91WE4
      Related
      ENSMUSP00000158256.2, ENSMUST00000237263.2
      Conserved Domains (1) summary
      pfam14975
      Location:242
      DUF4512; Domain of unknown function (DUF4512)
    2. NM_001358303.1NP_001345232.1  UPF0729 protein C18orf32 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK077642, BY129096, BY512913
      Consensus CDS
      CCDS37859.1
      Related
      ENSMUSP00000040450.5, ENSMUST00000040284.6
      Conserved Domains (1) summary
      pfam14975
      Location:242
      DUF4512; Domain of unknown function (DUF4512)
    3. NM_001358304.1NP_001345233.1  UPF0729 protein C18orf32 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      BY129096, BY512913, CK620827
      Consensus CDS
      CCDS37859.1
      Related
      ENSMUSP00000157657.2, ENSMUST00000236421.2
      Conserved Domains (1) summary
      pfam14975
      Location:242
      DUF4512; Domain of unknown function (DUF4512)
    4. NM_001358305.1NP_001345234.1  UPF0729 protein C18orf32 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC125122
      Consensus CDS
      CCDS37859.1
      Conserved Domains (1) summary
      pfam14975
      Location:242
      DUF4512; Domain of unknown function (DUF4512)
    5. NM_001358306.1NP_001345235.1  UPF0729 protein C18orf32 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC125122
      Conserved Domains (1) summary
      pfam14975
      Location:2565
      DUF4512; Domain of unknown function (DUF4512)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      75138910..75143006
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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