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    BC031181 cDNA sequence BC031181 [ Mus musculus (house mouse) ]

    Gene ID: 407819, updated on 31-Jan-2019

    Summary

    Official Symbol
    BC031181provided by MGI
    Official Full Name
    cDNA sequence BC031181provided by MGI
    Primary source
    MGI:MGI:3039614
    See related
    Ensembl:ENSMUSG00000036299
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in CNS E14 (RPKM 40.0), CNS E18 (RPKM 39.0) and 28 other tissues See more
    Orthologs

    Genomic context

    See BC031181 in Genome Data Viewer
    Location:
    18; 18 E2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (75005274..75009934)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (75165554..75169587)

    Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 9030625G05 gene Neighboring gene small nucleolar RNA, C/D box 58B Neighboring gene ribosomal protein L17 Neighboring gene dymeclin Neighboring gene ATP synthase subunit d, mitochondrial pseudogene Neighboring gene high mobility group box 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    UPF0729 protein C18orf32 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001181.4NP_001001181.1  UPF0729 protein C18orf32 homolog isoform 1

      See identical proteins and their annotated locations for NP_001001181.1

      Status: VALIDATED

      Source sequence(s)
      BC016084, BY129096, BY512913
      Consensus CDS
      CCDS37859.1
      UniProtKB/Swiss-Prot
      Q91WE4
      Related
      ENSMUSP00000040450.4, ENSMUST00000040284.4
      Conserved Domains (1) summary
      pfam14975
      Location:242
      DUF4512; Domain of unknown function (DUF4512)
    2. NM_001358303.1NP_001345232.1  UPF0729 protein C18orf32 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK077642, BY129096, BY512913
      Conserved Domains (1) summary
      pfam14975
      Location:242
      DUF4512; Domain of unknown function (DUF4512)
    3. NM_001358304.1NP_001345233.1  UPF0729 protein C18orf32 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      BY129096, BY512913, CK620827
      Conserved Domains (1) summary
      pfam14975
      Location:242
      DUF4512; Domain of unknown function (DUF4512)
    4. NM_001358305.1NP_001345234.1  UPF0729 protein C18orf32 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC125122
      Conserved Domains (1) summary
      pfam14975
      Location:242
      DUF4512; Domain of unknown function (DUF4512)
    5. NM_001358306.1NP_001345235.1  UPF0729 protein C18orf32 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC125122
      Conserved Domains (1) summary
      pfam14975
      Location:2565
      DUF4512; Domain of unknown function (DUF4512)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

      Range
      75005274..75009934
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006526080.1XP_006526143.1  UPF0729 protein C18orf32 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q91WE4
      Conserved Domains (1) summary
      pfam14975
      Location:242
      DUF4512; Domain of unknown function (DUF4512)
    2. XM_006526081.3XP_006526144.1  UPF0729 protein C18orf32 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q91WE4
      Conserved Domains (1) summary
      pfam14975
      Location:242
      DUF4512; Domain of unknown function (DUF4512)
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