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    HEATR4 HEAT repeat containing 4 [ Homo sapiens (human) ]

    Gene ID: 399671, updated on 17-Jun-2024

    Summary

    Official Symbol
    HEATR4provided by HGNC
    Official Full Name
    HEAT repeat containing 4provided by HGNC
    Primary source
    HGNC:HGNC:16761
    See related
    Ensembl:ENSG00000187105 AllianceGenome:HGNC:16761
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Predicted to enable oxidoreductase activity. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis (RPKM 3.3), duodenum (RPKM 0.3) and 12 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See HEATR4 in Genome Data Viewer
    Location:
    14q24.3
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (73478484..73633814, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (67686435..67841868, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (73945189..74025651, complement)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:73743236-73743736 Neighboring gene NUMB endocytic adaptor protein Neighboring gene NANOG hESC enhancer GRCh37_chr14:73864401-73864904 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8697 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5908 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5909 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5910 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:73925581-73926114 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:73926115-73926648 Neighboring gene uncharacterized LOC101928143 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8698 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8699 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:73956718-73957623 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5911 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:73958602-73959102 Neighboring gene uncharacterized LOC124903344 Neighboring gene acyl-CoA thioesterase 1 Neighboring gene ribosomal oxygenase 1 Neighboring gene NANOG hESC enhancer GRCh37_chr14:74020474-74020986 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_36531 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:74033223-74033740 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr14:74034134-74035333 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_36532 Neighboring gene 5',3'-nucleotidase, cytosolic pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8701 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8702 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8703 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:74058811-74059310 Neighboring gene tRNA-Lys (TTT) 14-1 Neighboring gene 5',3'-nucleotidase, cytosolic pseudogene 1 Neighboring gene acyl-CoA thioesterase 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8704 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:74079399-74079898 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:74080557-74080801 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:74083421-74084009 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8706 Neighboring gene acyl-CoA thioesterase 4 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_36549 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_36559 Neighboring gene acyl-CoA thioesterase 6 Neighboring gene NADH:ubiquinone oxidoreductase subunit B8 pseudogene 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_36561 Neighboring gene Sharpr-MPRA regulatory region 2817 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_36567 Neighboring gene RNA, U6 small nuclear 240, pseudogene Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_36575 Neighboring gene dynein axonemal light chain 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_36590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8707 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5913 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5914 Neighboring gene PNMA family member 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC48595

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables oxidoreductase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    HEAT repeat-containing protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001220484.1NP_001207413.1  HEAT repeat-containing protein 4

      See identical proteins and their annotated locations for NP_001207413.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC005225, AC005280, AK302564
      Consensus CDS
      CCDS9815.2
      UniProtKB/Swiss-Prot
      B7Z7V9, E9KL41, Q86WZ0
      Related
      ENSP00000450444.2, ENST00000553558.6
      Conserved Domains (2) summary
      sd00044
      Location:666694
      HEAT; HEAT repeat [structural motif]
      pfam13646
      Location:767847
      HEAT_2; HEAT repeats
    2. NM_203309.2NP_976054.2  HEAT repeat-containing protein 4

      See identical proteins and their annotated locations for NP_976054.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC005225, AC005280, BC047590
      Consensus CDS
      CCDS9815.2
      UniProtKB/Swiss-Prot
      B7Z7V9, E9KL41, Q86WZ0
      Related
      ENSP00000335447.2, ENST00000334988.2
      Conserved Domains (2) summary
      sd00044
      Location:666694
      HEAT; HEAT repeat [structural motif]
      pfam13646
      Location:767847
      HEAT_2; HEAT repeats

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      73478484..73633814 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047431370.1XP_047287326.1  HEAT repeat-containing protein 4 isoform X1

      UniProtKB/Swiss-Prot
      B7Z7V9, E9KL41, Q86WZ0
    2. XM_047431371.1XP_047287327.1  HEAT repeat-containing protein 4 isoform X4

    3. XM_024449582.2XP_024305350.1  HEAT repeat-containing protein 4 isoform X2

      Conserved Domains (2) summary
      sd00044
      Location:483504
      HEAT; HEAT repeat [structural motif]
      pfam02985
      Location:530559
      HEAT; HEAT repeat
    4. XM_011536761.4XP_011535063.1  HEAT repeat-containing protein 4 isoform X3

      Conserved Domains (1) summary
      pfam02985
      Location:530559
      HEAT; HEAT repeat

    RNA

    1. XR_002957552.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      67686435..67841868 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054376042.1XP_054232017.1  HEAT repeat-containing protein 4 isoform X1

      UniProtKB/Swiss-Prot
      B7Z7V9, E9KL41, Q86WZ0
    2. XM_054376041.1XP_054232016.1  HEAT repeat-containing protein 4 isoform X1

      UniProtKB/Swiss-Prot
      B7Z7V9, E9KL41, Q86WZ0
    3. XM_054376043.1XP_054232018.1  HEAT repeat-containing protein 4 isoform X1

      UniProtKB/Swiss-Prot
      B7Z7V9, E9KL41, Q86WZ0
    4. XM_054376046.1XP_054232021.1  HEAT repeat-containing protein 4 isoform X4

    5. XM_054376044.1XP_054232019.1  HEAT repeat-containing protein 4 isoform X2

    6. XM_054376045.1XP_054232020.1  HEAT repeat-containing protein 4 isoform X3

    RNA

    1. XR_008488869.1 RNA Sequence