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    Lratd2 LRAT domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 399603, updated on 23-Jun-2021

    Summary

    Official Symbol
    Lratd2provided by MGI
    Official Full Name
    LRAT domain containing 1provided by MGI
    Primary source
    MGI:MGI:3026924
    See related
    Ensembl:ENSMUSG00000072568
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam84; Fam84b; BF642811; D330050I23Rik
    Expression
    Ubiquitous expression in lung adult (RPKM 18.5), ovary adult (RPKM 9.8) and 26 other tissues See more
    Orthologs
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    Genomic context

    See Lratd2 in Genome Data Viewer
    Location:
    15; 15 D1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (60690845..60697954, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (60818996..60826105, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (60650551..60656635, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 23835 Neighboring gene alpha-1-B glycoprotein pseudogene Neighboring gene RIKEN cDNA 9930014A18 gene Neighboring gene VISTA enhancer mm642 Neighboring gene predicted gene, 53894

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    protein LRATD2
    Names
    family with sequence similarity 84, member B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001162926.1NP_001156398.1  protein LRATD2

      Status: VALIDATED

      Source sequence(s)
      AK139928, AK162412, BY426787, CN663980
      Consensus CDS
      CCDS49613.1
      UniProtKB/TrEMBL
      D3YXJ5
      Related
      ENSMUSP00000098200.4, ENSMUST00000100635.5
      Conserved Domains (1) summary
      cl21534
      Location:130212
      NLPC_P60; NlpC/P60 family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      60690845..60697954 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_384024.4 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_207269.1: Suppressed sequence

      Description
      NM_207269.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
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