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    Taf4 TBP-associated factor 4 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39765, updated on 8-Oct-2018

    Summary

    Official Symbol
    Taf4provided by FlyBase
    Official Full Name
    TBP-associated factor 4provided by FlyBase
    Primary source
    FLYBASE:FBgn0010280
    Locus tag
    Dmel_CG5444
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster (old-lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG5444; d110; Dmel\CG5444; dmTAF4; dTAF4; dTAFII110; dTAF[[II]]110; l(3)72Dj; p110; SR3-3; SY3-2 TAF110; TAF; taf110; Taf110; TAF110; taf4; TAF4; TAFII110; TAF[II]110; TAF[[II]]; Taf[[II]]110; TAF[[II]]110; TFIID; TFIID 110

    Genomic context

    See Taf4 in Genome Data Viewer
    Location:
    72D7-72D8; 3-44 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    Release 6.13 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (16113212..16121651)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (16106312..16114751)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Zinc-finger protein at 72D Neighboring gene strumpellin Neighboring gene phosphoglucose mutase Neighboring gene Signal sequence receptor beta

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription factor TFIID complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription factor TFIID complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    transcription factor TFIID complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 

    General protein information

    Preferred Names
    TBP-associated factor 4
    Names
    CG5444-PA
    CG5444-PB
    CG5444-PC
    CG5444-PD
    CG5444-PE
    CG5444-PF
    CG5444-PG
    CG5444-PH
    CG5444-PI
    TATA-associated factor 110
    TBP associated factor 110
    TBP-associated factor
    TBP-associated factor 110
    TBP-associated factor 110kD
    Taf4-PA
    Taf4-PB
    Taf4-PC
    Taf4-PD
    Taf4-PE
    Taf4-PF
    Taf4-PG
    Taf4-PH
    Taf4-PI
    lethal(3)72Dj

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      16113212..16121651
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_079378.4NP_524102.1  TBP-associated factor 4, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_524102.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P47825
      UniProtKB/TrEMBL
      E1JI11
      Related
      FBpp0075205, FBtr0075448
      Conserved Domains (2) summary
      smart00549
      Location:293383
      TAFH; TAF homology
      pfam05236
      Location:675917
      TAF4; Transcription initiation factor TFIID component TAF4 family
    2. NM_001144486.3NP_001137958.1  TBP-associated factor 4, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001137958.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7Z060
      Related
      FBpp0113081, FBtr0114589
      Conserved Domains (2) summary
      smart00549
      Location:460550
      TAFH; TAF homology
      pfam05236
      Location:8421084
      TAF4; Transcription initiation factor TFIID component TAF4 family
    3. NM_001274998.1NP_001261927.1  TBP-associated factor 4, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261927.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PFP3
      Related
      FBpp0305485, FBtr0333290
      Conserved Domains (2) summary
      smart00549
      Location:334424
      TAFH; TAF homology
      pfam05236
      Location:716958
      TAF4; Transcription initiation factor TFIID component TAF4 family
    4. NM_001274999.1NP_001261928.1  TBP-associated factor 4, isoform H [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261928.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PI76
      Related
      FBpp0305486, FBtr0333291
      Conserved Domains (2) summary
      smart00549
      Location:419509
      TAFH; TAF homology
      pfam05236
      Location:8011043
      TAF4; Transcription initiation factor TFIID component TAF4 family
    5. NM_176333.3NP_788511.1  TBP-associated factor 4, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_788511.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P47825
      UniProtKB/TrEMBL
      A4V201
      Related
      FBpp0075207, FBtr0075450
      Conserved Domains (2) summary
      smart00549
      Location:223313
      TAFH; TAF homology
      pfam05236
      Location:605847
      TAF4; Transcription initiation factor TFIID component TAF4 family
    6. NM_001169982.2NP_001163453.1  TBP-associated factor 4, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001163453.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P47825
      UniProtKB/TrEMBL
      E1JI11
      Related
      FBpp0291125, FBtr0301911
      Conserved Domains (2) summary
      smart00549
      Location:293383
      TAFH; TAF homology
      pfam05236
      Location:675917
      TAF4; Transcription initiation factor TFIID component TAF4 family
    7. NM_206379.3NP_996101.1  TBP-associated factor 4, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_996101.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P47825
      UniProtKB/TrEMBL
      A4V201
      Related
      FBpp0089259, FBtr0075451
      Conserved Domains (2) summary
      smart00549
      Location:223313
      TAFH; TAF homology
      pfam05236
      Location:605847
      TAF4; Transcription initiation factor TFIID component TAF4 family
    8. NM_168651.3NP_730109.1  TBP-associated factor 4, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_730109.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P47825
      UniProtKB/TrEMBL
      E1JI11
      Related
      FBpp0075206, FBtr0075449
      Conserved Domains (2) summary
      smart00549
      Location:293383
      TAFH; TAF homology
      pfam05236
      Location:675917
      TAF4; Transcription initiation factor TFIID component TAF4 family
    9. NM_001300148.1NP_001287077.1  TBP-associated factor 4, isoform I [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287077.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P47825
      UniProtKB/TrEMBL
      E1JI11
      Related
      FBpp0311865, FBtr0345951
      Conserved Domains (2) summary
      smart00549
      Location:293383
      TAFH; TAF homology
      pfam05236
      Location:675917
      TAF4; Transcription initiation factor TFIID component TAF4 family
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