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    SEMA3A semaphorin 3A [ Gallus gallus (chicken) ]

    Gene ID: 395825, updated on 14-Jan-2019

    Summary

    Symbol
    SEMA3Aprovided by CGNC
    Full Name
    semaphorin 3Aprovided by CGNC
    Primary source
    CGNC:4946
    See related
    Ensembl:ENSGALG00000006560
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    COLL-1; semaphorin-3A
    Orthologs

    Genomic context

    See SEMA3A in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 1 NC_006088.5 (9228504..9514365)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 1 NC_006088.4 (8709850..8998426)

    Chromosome 1 - NC_006088.5Genomic Context describing neighboring genes Neighboring gene semaphorin 3D Neighboring gene uncharacterized LOC112532981 Neighboring gene semaphorin 3E Neighboring gene piccolo presynaptic cytomatrix protein Neighboring gene uncharacterized LOC107055502

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    chemorepellent activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    neuropilin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    neuropilin binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    semaphorin receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    fasciculation of motor neuron axon IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    motor neuron axon guidance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative chemotaxis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    negative regulation of axon extension involved in axon guidance IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    negative regulation of protein localization to cell surface IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neural crest cell migration IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    neuron projection maintenance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of cell migration IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of neuron migration IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of synapse organization EXP
    Inferred from Experiment
    more info
    PubMed 
    regulation of synapse organization IDA
    Inferred from Direct Assay
    more info
    PubMed 
    semaphorin-plexin signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    axon IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cell body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    extracellular region TAS
    Traceable Author Statement
    more info
     
    extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 
    glutamatergic synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    glutamatergic synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    semaphorin-3A
    Names
    collapsin
    collapsin-1
    sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204977.1NP_990308.2  semaphorin-3A

      Status: PROVISIONAL

      Source sequence(s)
      U02528
      UniProtKB/Swiss-Prot
      Q90607
      Related
      ENSGALP00000010577.4, ENSGALT00000010591.4
      Conserved Domains (4) summary
      cd05871
      Location:617707
      Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
      cd11249
      Location:62554
      Sema_3A; The Sema domain, a protein interacting module, of semaphorin 3A (Sema3A)
      smart00410
      Location:622688
      IG_like; Immunoglobulin like
      smart00423
      Location:552588
      PSI; domain found in Plexins, Semaphorins and Integrins

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_006088.5 Reference GRCg6a Primary Assembly

      Range
      9228504..9514365
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015295177.2XP_015150663.1  semaphorin-3A isoform X1

      Related
      ENSGALP00000072613.1, ENSGALT00000098881.1
      Conserved Domains (4) summary
      cd05871
      Location:581671
      Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
      cd11249
      Location:26518
      Sema_3A; The Sema domain, a protein interacting module, of semaphorin 3A (Sema3A)
      smart00410
      Location:586652
      IG_like; Immunoglobulin like
      smart00423
      Location:516552
      PSI; domain found in Plexins, Semaphorins and Integrins
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