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    KRTAP5-3 keratin associated protein 5-3 [ Homo sapiens (human) ]

    Gene ID: 387266, updated on 7-Apr-2024

    Summary

    Official Symbol
    KRTAP5-3provided by HGNC
    Official Full Name
    keratin associated protein 5-3provided by HGNC
    Primary source
    HGNC:HGNC:23598
    See related
    Ensembl:ENSG00000196224 AllianceGenome:HGNC:23598
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    KRTAP5-9; KRTAP5.3
    Summary
    Predicted to be located in cytosol. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See KRTAP5-3 in Genome Data Viewer
    Location:
    11p15.5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (1607565..1608463, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (1691417..1692315, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (1628795..1629693, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene KRTAP5-1/KRTAP5-2 antisense RNA 1 Neighboring gene keratin associated protein 5-1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:1617579-1618152 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:1618727-1619300 Neighboring gene keratin associated protein 5-2 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:1640412-1641611 Neighboring gene keratin associated protein 5-4 Neighboring gene keratin associated protein 5-5

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    located_in intermediate filament IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    keratin-associated protein 5-3
    Names
    keratin-associated protein 5-9
    keratin-associated protein 5.3
    keratin-associated protein 5.9
    ultrahigh sulfur keratin-associated protein 5.3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012708.2NP_001012726.1  keratin-associated protein 5-3

      See identical proteins and their annotated locations for NP_001012726.1

      Status: VALIDATED

      Source sequence(s)
      AB126072, AJ628246, AP006285
      Consensus CDS
      CCDS41591.1
      UniProtKB/Swiss-Prot
      Q6L8H2, Q6PL44, Q701N3
      Related
      ENSP00000382592.1, ENST00000399685.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      1607565..1608463 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_025791792.1 Reference GRCh38.p14 PATCHES

      Range
      347541..348439 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187584.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      89802..90700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_2

    Genomic

    1. NT_187657.1 Reference GRCh38.p14 ALT_REF_LOCI_2

      Range
      84118..85016 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      1691417..1692315 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)