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    Pnma5 paraneoplastic antigen family 5 [ Mus musculus (house mouse) ]

    Gene ID: 385377, updated on 27-Jan-2018

    Summary

    Official Symbol
    Pnma5provided by MGI
    Official Full Name
    paraneoplastic antigen family 5provided by MGI
    Primary source
    MGI:MGI:2180566
    See related
    Ensembl:ENSMUSG00000050424 Vega:OTTMUSG00000017701
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mKIAA1934
    Expression
    Biased expression in placenta adult (RPKM 6.2), genital fat pad adult (RPKM 0.7) and 2 other tissues See more
    Orthologs

    Genomic context

    See Pnma5 in Genome Data Viewer
    Location:
    X; X A7.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (73033981..73040260, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (70279327..70282442, complement)

    Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene NAD(P) dependent steroid dehydrogenase-like Neighboring gene zinc finger protein 185 Neighboring gene microRNA 2137 Neighboring gene paraneoplastic antigen MA3 pseudogene Neighboring gene paraneoplastic antigen MA3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA1934

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    paraneoplastic antigen-like protein 5

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100461.3NP_001093931.1  paraneoplastic antigen-like protein 5

      See identical proteins and their annotated locations for NP_001093931.1

      Status: VALIDATED

      Source sequence(s)
      AK141385, AK220432, BX524422
      Consensus CDS
      CCDS41004.1
      UniProtKB/Swiss-Prot
      Q5DTT8
      UniProtKB/TrEMBL
      Q3URM0
      Related
      ENSMUSP00000110187.3, ENSMUST00000114540.3
      Conserved Domains (1) summary
      pfam14893
      Location:1322
      PNMA; PNMA

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

      Range
      73033981..73040260 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011247625.2XP_011245927.1  paraneoplastic antigen-like protein 5 isoform X1

      See identical proteins and their annotated locations for XP_011245927.1

      UniProtKB/Swiss-Prot
      Q5DTT8
      Conserved Domains (1) summary
      pfam14893
      Location:1322
      PNMA; PNMA
    2. XM_011247626.2XP_011245928.1  paraneoplastic antigen-like protein 5 isoform X1

      See identical proteins and their annotated locations for XP_011245928.1

      UniProtKB/Swiss-Prot
      Q5DTT8
      Conserved Domains (1) summary
      pfam14893
      Location:1322
      PNMA; PNMA

    Reference GRCm38.p4 129S6/SvEvTac

    Genomic

    1. NT_099024.1 Reference GRCm38.p4 129S6/SvEvTac

      Range
      30312..33437 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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