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    Ankfn1 ankyrin-repeat and fibronectin type III domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 382543, updated on 16-Nov-2021

    Summary

    Official Symbol
    Ankfn1provided by MGI
    Official Full Name
    ankyrin-repeat and fibronectin type III domain containing 1provided by MGI
    Primary source
    MGI:MGI:2686021
    See related
    Ensembl:ENSMUSG00000047773
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    nmf9; mWAKE; Gm1175; 4932411E22Rik
    Expression
    Biased expression in bladder adult (RPKM 7.9), CNS E18 (RPKM 1.0) and 6 other tissues See more
    Orthologs
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    Genomic context

    See Ankfn1 in Genome Data Viewer
    Location:
    11; 11 C
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (89280918..89668727, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (89390092..89777901, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (89282400..89402034, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene noggin Neighboring gene predicted gene, 42088 Neighboring gene predicted gene, 34619 Neighboring gene predicted gene, 34677 Neighboring gene phosphatidylcholine transfer protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 
    • Chemically induced (ENU) (1) 
    • Endonuclease-mediated (2)  1 citation

    General gene information

    Homology

    Clone Names

    • MGC175922

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in spindle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    ankyrin repeat and fibronectin type-III domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001327810.1NP_001314739.1  ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL645903, AL662930, AL672175, AL672280, AL772375
      Related
      ENSMUSP00000158789.2, ENSMUST00000238273.3
    2. NM_172534.2NP_766122.1  ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform 2

      See identical proteins and their annotated locations for NP_766122.1

      Status: VALIDATED

      Source sequence(s)
      AK029964
      Consensus CDS
      CCDS25237.1
      UniProtKB/TrEMBL
      Q8CDJ6
      Related
      ENSMUSP00000049776.2, ENSMUST00000050983.2

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      89280918..89668727 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030246107.1XP_030101967.1  ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform X1

      Conserved Domains (3) summary
      cd00063
      Location:222293
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00045
      Location:66100
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:70123
      Ank_2; Ankyrin repeats (3 copies)
    2. XM_017314636.3XP_017170125.1  ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform X1

      Related
      ENSMUSP00000146987.2, ENSMUST00000207815.2
      Conserved Domains (3) summary
      cd00063
      Location:222293
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00045
      Location:66100
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:70123
      Ank_2; Ankyrin repeats (3 copies)
    3. XM_030246105.2XP_030101965.1  ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform X1

      Conserved Domains (3) summary
      cd00063
      Location:222293
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00045
      Location:66100
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:70123
      Ank_2; Ankyrin repeats (3 copies)
    4. XM_030246106.2XP_030101966.1  ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform X1

      Conserved Domains (3) summary
      cd00063
      Location:222293
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00045
      Location:66100
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:70123
      Ank_2; Ankyrin repeats (3 copies)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001080933.1: Suppressed sequence

      Description
      NM_001080933.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
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