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    Foxr1 forkhead box R1 [ Mus musculus (house mouse) ]

    Gene ID: 382074, updated on 31-Jan-2019

    Summary

    Official Symbol
    Foxr1provided by MGI
    Official Full Name
    forkhead box R1provided by MGI
    Primary source
    MGI:MGI:2685961
    See related
    Ensembl:ENSMUSG00000074397
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Foxn5; Gm1115
    Expression
    Low expression observed in reference dataset See more
    Orthologs

    Genomic context

    See Foxr1 in Genome Data Viewer
    Location:
    9 A5.2; 9 24.84 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (44434234..44440868, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (44242317..44248951, complement)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex 4 Neighboring gene ribosomal protein S25 Neighboring gene coiled-coil domain containing 84 Neighboring gene uroplakin 2 Neighboring gene family with sequence similarity 103, member A1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    forkhead box protein R1
    Names
    forkhead box protein N5

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033469.2NP_001028641.1  forkhead box protein R1

      See identical proteins and their annotated locations for NP_001028641.1

      Status: PROVISIONAL

      Source sequence(s)
      AK139562
      Consensus CDS
      CCDS23111.1
      UniProtKB/Swiss-Prot
      Q3UTB7
      Related
      ENSMUSP00000096436.1, ENSMUST00000098837.2
      Conserved Domains (1) summary
      cl00061
      Location:149182
      FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      44434234..44440868 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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