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    Rbm33 RNA binding motif protein 33 [ Mus musculus (house mouse) ]

    Gene ID: 381626, updated on 27-Jan-2018

    Summary

    Official Symbol
    Rbm33provided by MGI
    Official Full Name
    RNA binding motif protein 33provided by MGI
    Primary source
    MGI:MGI:1919670
    See related
    Ensembl:ENSMUSG00000048271 Vega:OTTMUSG00000025398
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Prr8; AA386890; 3200001K10Rik; 6430512A10Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 22.3), CNS E14 (RPKM 16.3) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rbm33 in Genome Data Viewer
    Location:
    5; 5 B1
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (28316890..28419244)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (28643729..28745782)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 35524 Neighboring gene predicted gene, 35602 Neighboring gene RIKEN cDNA 9530036O11Rik Neighboring gene sonic hedgehog Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    • mRNA processing, organism-specific biosystem (from WikiPathways)
      mRNA processing, organism-specific biosystemAdapted from Reactome, see: [http://www.reactome.org/cgi-bin/eventbrowser_st_id?ST_ID=REACT_1675.1 REACT 1675.1] This process describes the conversion of precursor messenger RNA into mature messenge...

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    RNA-binding protein 33
    Names
    proline rich 8
    proline-rich protein 8

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028234.1NP_082510.1  RNA-binding protein 33

      See identical proteins and their annotated locations for NP_082510.1

      Status: PROVISIONAL

      Source sequence(s)
      AC134530, AK014289, AK153360, BB637766, CB528202, CN703034
      Consensus CDS
      CCDS51448.1
      UniProtKB/Swiss-Prot
      Q9CXK9
      Related
      ENSMUSP00000062449.6, OTTMUSP00000071342, ENSMUST00000059644.12, OTTMUST00000134546
      Conserved Domains (1) summary
      cd00590
      Location:11611226
      RRM_SF; RNA recognition motif (RRM) superfamily

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      28316890..28419244
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006535733.3XP_006535796.1  RNA-binding protein 33 isoform X1

      Conserved Domains (1) summary
      cd00590
      Location:11601225
      RRM_SF; RNA recognition motif (RRM) superfamily
    2. XM_006535735.3XP_006535798.1  RNA-binding protein 33 isoform X3

      Conserved Domains (1) summary
      cd00590
      Location:11201185
      RRM_SF; RNA recognition motif (RRM) superfamily
    3. XM_006535734.3XP_006535797.1  RNA-binding protein 33 isoform X2

      UniProtKB/TrEMBL
      D3Z5I9
      Related
      ENSMUSP00000110534.1, OTTMUSP00000030836, ENSMUST00000114884.7, OTTMUST00000062525
      Conserved Domains (1) summary
      cd00590
      Location:11211186
      RRM_SF; RNA recognition motif (RRM) superfamily
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