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    Rbm33 RNA binding motif protein 33 [ Mus musculus (house mouse) ]

    Gene ID: 381626, updated on 23-Jun-2021

    Summary

    Official Symbol
    Rbm33provided by MGI
    Official Full Name
    RNA binding motif protein 33provided by MGI
    Primary source
    MGI:MGI:1919670
    See related
    Ensembl:ENSMUSG00000048271
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    P; Prr8; AA386890; 3200001K10Rik; 6430512A10Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 22.3), CNS E14 (RPKM 16.3) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Rbm33 in Genome Data Viewer
    Location:
    5; 5 B1
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (28521817..28624242)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (28316836..28419244)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (28643729..28745782)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene canopy FGF signaling regulator 1 Neighboring gene predicted gene, 35524 Neighboring gene predicted gene, 35602 Neighboring gene RIKEN cDNA 9530036O11Rik Neighboring gene sonic hedgehog brain enhancer region in intron 2 Neighboring gene sonic hedgehog Neighboring gene sonic hedgehog floor plate enhancer 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    RNA-binding protein 33
    Names
    proline rich 8
    proline-rich protein 8

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028234.1NP_082510.1  RNA-binding protein 33

      See identical proteins and their annotated locations for NP_082510.1

      Status: PROVISIONAL

      Source sequence(s)
      AC134530, AK014289, AK153360, BB637766, CB528202, CN703034
      Consensus CDS
      CCDS51448.1
      UniProtKB/Swiss-Prot
      Q9CXK9
      Related
      ENSMUSP00000062449.7, ENSMUST00000059644.13
      Conserved Domains (1) summary
      cd00590
      Location:11611226
      RRM_SF; RNA recognition motif (RRM) superfamily

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      28521817..28624242
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006535733.5XP_006535796.1  RNA-binding protein 33 isoform X1

      Conserved Domains (5) summary
      PHA03418
      Location:451491
      PHA03418; hypothetical E4 protein; Provisional
      COG5271
      Location:15238
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      PRK09510
      Location:802873
      tolA; cell envelope integrity inner membrane protein TolA; Provisional
      PRK14086
      Location:456618
      dnaA; chromosomal replication initiator protein DnaA
      cd00590
      Location:11601225
      RRM_SF; RNA recognition motif (RRM) superfamily
    2. XM_006535734.5XP_006535797.1  RNA-binding protein 33 isoform X2

      UniProtKB/TrEMBL
      D3Z5I9
      Related
      ENSMUSP00000110534.2, ENSMUST00000114884.8
      Conserved Domains (6) summary
      PHA03418
      Location:411451
      PHA03418; hypothetical E4 protein; Provisional
      PHA03247
      Location:398688
      PHA03247; large tegument protein UL36; Provisional
      COG5271
      Location:15200
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      PRK09510
      Location:762833
      tolA; cell envelope integrity inner membrane protein TolA; Provisional
      cd00590
      Location:11211186
      RRM_SF; RNA recognition motif (RRM) superfamily
      pfam09770
      Location:417538
      PAT1; Topoisomerase II-associated protein PAT1
    3. XM_006535735.5XP_006535798.1  RNA-binding protein 33 isoform X3

      Conserved Domains (6) summary
      PHA03418
      Location:411451
      PHA03418; hypothetical E4 protein; Provisional
      PHA03247
      Location:398688
      PHA03247; large tegument protein UL36; Provisional
      COG5271
      Location:15200
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      PRK09510
      Location:762833
      tolA; cell envelope integrity inner membrane protein TolA; Provisional
      cd00590
      Location:11201185
      RRM_SF; RNA recognition motif (RRM) superfamily
      pfam09770
      Location:417538
      PAT1; Topoisomerase II-associated protein PAT1
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