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    C87499 expressed sequence C87499 [ Mus musculus (house mouse) ]

    Gene ID: 381590, updated on 31-Jan-2019

    Summary

    Official Symbol
    C87499provided by MGI
    Official Full Name
    expressed sequence C87499provided by MGI
    Primary source
    MGI:MGI:2140706
    See related
    Ensembl:ENSMUSG00000038330
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more

    Genomic context

    See C87499 in Genome Data Viewer
    Location:
    4; 4 C4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (88627320..88634186, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (88273224..88280090, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L48 pseudogene Neighboring gene interferon alpha 12 Neighboring gene interferon alpha 13 Neighboring gene interferon-alpha 3 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Clone Names

    • MGC60825

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    uncharacterized protein LOC381590

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198663.3NP_941065.2  uncharacterized protein LOC381590

      See identical proteins and their annotated locations for NP_941065.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and is the protein-coding transcript.
      Source sequence(s)
      AK135883, CA559642
      Consensus CDS
      CCDS51221.1
      UniProtKB/TrEMBL
      Q3UX49
      Related
      ENSMUSP00000056691.3, ENSMUST00000053304.9

    RNA

    1. NR_027385.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate coding exon compared to variant 1, that causes a frameshift. The resulting transcript is a candidate for nonsense-mediated mRNA decay (NMD) and is therefore not thought to encode a protein.
      Source sequence(s)
      AK163216, CJ083078

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      88627320..88634186 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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