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    Gm13084 predicted gene 13084 [ Mus musculus (house mouse) ]

    Gene ID: 381569, updated on 9-Sep-2018

    Summary

    Official Symbol
    Gm13084provided by MGI
    Official Full Name
    predicted gene 13084provided by MGI
    Primary source
    MGI:MGI:3650237
    See related
    Ensembl:ENSMUSG00000059218 Vega:OTTMUSG00000010328
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more

    Genomic context

    See Gm13084 in Genome Data Viewer
    Location:
    4 E1; 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (143809245..143816093, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (143399894..143405996, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene predicted gene 13078 Neighboring gene predicted gene 13023 Neighboring gene predicted gene 13103 Neighboring gene PRAME family member 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Clone Names

    • MGC91195

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005371.3NP_001005371.2  oogenesin-like isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      BC080785, BY029847, CJ082474, CJ206640
      Consensus CDS
      CCDS38948.1
      UniProtKB/TrEMBL
      A2A8N0, Q66JS9
      Related
      ENSMUSP00000074557.3, OTTMUSP00000011030, ENSMUST00000075045.3, OTTMUST00000024039
    2. NM_001347257.1NP_001334186.1  oogenesin-like isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice junction compared to variant 1, that causes a frameshift. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AL626771
      Consensus CDS
      CCDS84819.1
      UniProtKB/TrEMBL
      A6PWA3

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      143809245..143816093 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006538990.3XP_006539053.1  oogenesin-like isoform X1

      Related
      ENSMUSP00000101395.1, OTTMUSP00000031168, ENSMUST00000105769.7, OTTMUST00000063102
    2. XM_017320294.1XP_017175783.1  oogenesin-like isoform X2

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