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    Dpy19l4 dpy-19-like 4 (C. elegans) [ Mus musculus (house mouse) ]

    Gene ID: 381510, updated on 23-Jun-2021

    Summary

    Official Symbol
    Dpy19l4provided by MGI
    Official Full Name
    dpy-19-like 4 (C. elegans)provided by MGI
    Primary source
    MGI:MGI:2685869
    See related
    Ensembl:ENSMUSG00000045205
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Na; Narg3; Gm1023
    Expression
    Ubiquitous expression in genital fat pad adult (RPKM 7.8), limb E14.5 (RPKM 4.2) and 25 other tissues See more
    Orthologs
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    Genomic context

    See Dpy19l4 in Genome Data Viewer
    Location:
    4 A1; 4
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (11261315..11322153, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (11261315..11322138, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (11192226..11249278, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A630034I12 gene Neighboring gene cyclin E2 Neighboring gene integrator complex subunit 8 Neighboring gene epithelial splicing regulatory protein 1 Neighboring gene ES cell cis-regulatory motif 9a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables mannosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nuclear inner membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    probable C-mannosyltransferase DPY19L4
    Names
    NMDA receptor-regulated gene 3
    dpy-19-like protein 4
    protein dpy-19 homolog 4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081201.2NP_001074670.1  probable C-mannosyltransferase DPY19L4

      See identical proteins and their annotated locations for NP_001074670.1

      Status: VALIDATED

      Source sequence(s)
      AL772170, AL840625, AL953845
      Consensus CDS
      CCDS38692.1
      UniProtKB/Swiss-Prot
      A2AJQ3
      Related
      ENSMUSP00000081954.6, ENSMUST00000084892.12
      Conserved Domains (1) summary
      pfam10034
      Location:60713
      Dpy19; Q-cell neuroblast polarization

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      11261315..11322153 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006538041.5XP_006538104.1  probable C-mannosyltransferase DPY19L4 isoform X1

      Conserved Domains (1) summary
      pfam10034
      Location:1652
      Dpy19; Q-cell neuroblast polarisation
    2. XM_006538042.5XP_006538105.1  probable C-mannosyltransferase DPY19L4 isoform X2

      Conserved Domains (1) summary
      pfam10034
      Location:1456
      Dpy19; Q-cell neuroblast polarisation

    RNA

    1. XR_004941929.1 RNA Sequence

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