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    Accsl 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like [ Mus musculus (house mouse) ]

    Gene ID: 381411, updated on 31-Jan-2019

    Summary

    Official Symbol
    Accslprovided by MGI
    Official Full Name
    1-aminocyclopropane-1-carboxylate synthase (non-functional)-likeprovided by MGI
    Primary source
    MGI:MGI:3584519
    See related
    Ensembl:ENSMUSG00000075023
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1967
    Expression
    Biased expression in ovary adult (RPKM 1.5), cerebellum adult (RPKM 0.2) and 5 other tissues See more

    Genomic context

    See Accsl in Genome Data Viewer
    Location:
    2; 2 E1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (93855360..93931236, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (93695520..93709260, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene exostoses (multiple) 2 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene 1-aminocyclopropane-1-carboxylate synthase (non-functional) Neighboring gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 pseudogene Neighboring gene predicted gene, 39884

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2
    Names
    1-aminocyclopropane-1-carboxylate synthase homolog(non-functional)-like
    1-aminocyclopropane-1-carboxylate synthase-like protein 2
    ACC synthase-like protein 2
    novel aminotransferase class I and II domain containing protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033452.4NP_001028624.2  probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 isoform 1

      See identical proteins and their annotated locations for NP_001028624.2

      Status: VALIDATED

      Source sequence(s)
      AK135828, BM225295, CF913709
      Consensus CDS
      CCDS38183.1
      UniProtKB/Swiss-Prot
      Q3UX83
      Related
      ENSMUSP00000097281.3, ENSMUST00000099690.3
      Conserved Domains (2) summary
      cd00609
      Location:193568
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      PLN02607
      Location:172577
      PLN02607; 1-aminocyclopropane-1-carboxylate synthase
    2. NM_001363092.1NP_001350021.1  probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      AK163963, AL732472
      Conserved Domains (1) summary
      cl27741
      Location:100515
      Aminotran_1_2; Aminotransferase class I and II
    3. NM_001363093.1NP_001350022.1  probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (3) has a shorter and distinct N-terminus compared to isoform 1.
      Source sequence(s)
      AK142866, AL732472
      Conserved Domains (1) summary
      cl27741
      Location:9352
      Aminotran_1_2; Aminotransferase class I and II

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      93855360..93931236 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011239646.1XP_011237948.1  probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 isoform X2

      UniProtKB/Swiss-Prot
      Q3UX83
      Conserved Domains (1) summary
      cl27741
      Location:100515
      Aminotran_1_2; Aminotransferase class I and II
    2. XM_011239645.2XP_011237947.1  probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 isoform X1

      Conserved Domains (2) summary
      cd00609
      Location:197572
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      PLN02607
      Location:176581
      PLN02607; 1-aminocyclopropane-1-carboxylate synthase
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