Format

Send to:

Choose Destination
    • Showing Current items.

    Accsl 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like [ Mus musculus (house mouse) ]

    Gene ID: 381411, updated on 22-Aug-2021

    Summary

    Official Symbol
    Accslprovided by MGI
    Official Full Name
    1-aminocyclopropane-1-carboxylate synthase (non-functional)-likeprovided by MGI
    Primary source
    MGI:MGI:3584519
    See related
    Ensembl:ENSMUSG00000075023
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1967
    Expression
    Biased expression in ovary adult (RPKM 1.5), cerebellum adult (RPKM 0.2) and 5 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Accsl in Genome Data Viewer
    Location:
    2; 2 E1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (93685705..93760827, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (93855360..93930482, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (93695520..93709260, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene exostosin glycosyltransferase 2 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene 1-aminocyclopropane-1-carboxylate synthase (non-functional) Neighboring gene predicted gene, 54116 Neighboring gene predicted gene, 39884 Neighboring gene predicted gene 1335

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables transaminase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cellular amino acid metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2
    Names
    1-aminocyclopropane-1-carboxylate synthase homolog(non-functional)-like
    1-aminocyclopropane-1-carboxylate synthase-like protein 2
    ACC synthase-like protein 2
    novel aminotransferase class I and II domain containing protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033452.4NP_001028624.2  probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 isoform 1

      See identical proteins and their annotated locations for NP_001028624.2

      Status: VALIDATED

      Source sequence(s)
      AK135828, BM225295, CF913709
      Consensus CDS
      CCDS38183.1
      UniProtKB/Swiss-Prot
      Q3UX83
      Related
      ENSMUSP00000097281.4, ENSMUST00000099690.4
      Conserved Domains (2) summary
      cd00609
      Location:193568
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      PLN02607
      Location:172577
      PLN02607; 1-aminocyclopropane-1-carboxylate synthase
    2. NM_001363092.1NP_001350021.1  probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      AK163963, AL732472
      Conserved Domains (1) summary
      cl27741
      Location:100515
      Aminotran_1_2; Aminotransferase class I and II
    3. NM_001363093.1NP_001350022.1  probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (3) has a shorter and distinct N-terminus compared to isoform 1.
      Source sequence(s)
      AK142866, AL732472
      Conserved Domains (1) summary
      cl27741
      Location:9352
      Aminotran_1_2; Aminotransferase class I and II

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      93685705..93760827 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011239645.4XP_011237947.1  probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 isoform X1

      Conserved Domains (1) summary
      PLN02450
      Location:156571
      PLN02450; 1-aminocyclopropane-1-carboxylate synthase
    Support Center