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    Lyrm4 LYR motif containing 4 [ Mus musculus (house mouse) ]

    Gene ID: 380840, updated on 23-Jun-2021

    Summary

    Official Symbol
    Lyrm4provided by MGI
    Official Full Name
    LYR motif containing 4provided by MGI
    Primary source
    MGI:MGI:2683538
    See related
    Ensembl:ENSMUSG00000046573
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm903; BC034664
    Expression
    Ubiquitous expression in CNS E18 (RPKM 6.6), cortex adult (RPKM 6.3) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Lyrm4 in Genome Data Viewer
    Location:
    13; 13 A3.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (36162780..36301340, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (35978797..36117357, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (36070666..36209226, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene ribonuclease P 40 subunit Neighboring gene protein phosphatase 1, regulatory subunit 3G Neighboring gene predicted gene, 30127 Neighboring gene transmembrane p24 trafficking protein 10, pseudogene Neighboring gene predicted gene, 18132 Neighboring gene phenylalanine-tRNA synthetase 2 (mitochondrial) Neighboring gene predicted gene, 40912 Neighboring gene high mobility group box 1-like pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC38622

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in iron-sulfur cluster assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of L-cysteine desulfurase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in mitochondrion HDA PubMed 
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    LYR motif-containing protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_201358.2NP_958746.1  LYR motif-containing protein 4

      See identical proteins and their annotated locations for NP_958746.1

      Status: VALIDATED

      Source sequence(s)
      AC124562, AC134860, AK050553
      Consensus CDS
      CCDS36633.1
      UniProtKB/Swiss-Prot
      Q8K215
      Related
      ENSMUSP00000060779.7, ENSMUST00000053265.8
      Conserved Domains (1) summary
      cd20264
      Location:876
      Complex1_LYR_LYRM4; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 4 (LYRM4) and similar proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      36162780..36301340 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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