Format

Send to:

Choose Destination
    • Showing Current items.

    Fastkd5 FAST kinase domains 5 [ Mus musculus (house mouse) ]

    Gene ID: 380601, updated on 31-Jan-2019

    Summary

    Official Symbol
    Fastkd5provided by MGI
    Official Full Name
    FAST kinase domains 5provided by MGI
    Primary source
    MGI:MGI:2139469
    See related
    Ensembl:ENSMUSG00000079043
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C78212; mKIAA1792
    Expression
    Ubiquitous expression in liver E14 (RPKM 2.8), CNS E11.5 (RPKM 2.7) and 27 other tissues See more
    Orthologs

    Genomic context

    See Fastkd5 in Genome Data Viewer
    Location:
    2; 2 F1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (130613838..130630027, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (130439574..130455763, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene oxytocin Neighboring gene arginine vasopressin Neighboring gene U box domain containing 5 Neighboring gene leucine zipper, putative tumor suppressor family member 3 Neighboring gene DDRGK domain containing 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • FLJ13149, KIAA1792, MGC60835

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    rRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    cellular respiration ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrial RNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    mitochondrial nucleoid ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrion ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    ribonucleoprotein granule ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    FAST kinase domain-containing protein 5, mitochondrial

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001146084.1NP_001139556.1  FAST kinase domain-containing protein 5, mitochondrial

      See identical proteins and their annotated locations for NP_001139556.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK143929, AW547061, BB610359
      Consensus CDS
      CCDS50713.1
      UniProtKB/Swiss-Prot
      Q7TMV3
      UniProtKB/TrEMBL
      A0A0R4J291
      Related
      ENSMUSP00000137385.1, ENSMUST00000179273.1
      Conserved Domains (3) summary
      smart00952
      Location:742801
      RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
      pfam06743
      Location:475543
      FAST_1; FAST kinase-like protein, subdomain 1
      pfam08368
      Location:558645
      FAST_2; FAST kinase-like protein, subdomain 2
    2. NM_198176.2NP_937819.2  FAST kinase domain-containing protein 5, mitochondrial

      See identical proteins and their annotated locations for NP_937819.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK143929, AW547061, BB610359
      Consensus CDS
      CCDS50713.1
      UniProtKB/Swiss-Prot
      Q7TMV3
      UniProtKB/TrEMBL
      A0A0R4J291
      Related
      ENSMUSP00000105891.1, ENSMUST00000110262.1
      Conserved Domains (3) summary
      smart00952
      Location:742801
      RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
      pfam06743
      Location:475543
      FAST_1; FAST kinase-like protein, subdomain 1
      pfam08368
      Location:558645
      FAST_2; FAST kinase-like protein, subdomain 2

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      130613838..130630027 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center