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    J3R temporal expression: early [ Vaccinia virus ]

    Gene ID: 3707551, updated on 18-Aug-2023

    Summary

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    Gene symbol
    J3R
    Gene description
    temporal expression: early
    Locus tag
    VACWR095
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Vaccinia virus (strain: WR (Western Reserve))
    Lineage
    Viruses; dsDNA viruses, no RNA stage; Poxviridae; Chordopoxvirinae; Orthopoxvirus
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    Genomic context

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    Sequence:
    NC_006998.1 (81323..82324)

    NC_006998.1Genomic Context describing neighboring genes Neighboring gene temporal expression: late Neighboring gene temporal expression: late Neighboring gene temporal expression: early Neighboring gene temporal expression: early Neighboring gene late 16kDa putative membrane protein Neighboring gene temporal expression: early/late Neighboring gene temporal expression: late

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_006998.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleotide sequence of the vaccinia virus thymidine kinase gene and the nature of spontaneous frameshift mutations. Weir JP, et al. J Virol, 1983 May. PMID 6842679, Free PMC Article
    2. Nucleotide sequence of a cluster of early and late genes in a conserved segment of the vaccinia virus genome. Plucienniczak A, et al. Nucleic Acids Res, 1985 Feb 11. PMID 2987815, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    poly(A) polymerase small subunit
    YP_232977.1
    • poly(A) polymerase small subunit; methylates the ribose 2' OH group of the first transcribed nucleotide; structure has been solved (PDB: 2ga9);The poxviridae are enveloped unsegmented dsDNA viruses; unlike many dsDNA viruses that replicate in the host nucleus poxviruses encode their own replication machinery and therefore replicate in the cytoplasm; viral genes are expressed in a bi-phasic manner with early genes encoding non-structural proteins involved in genome replication and late genes encoding the viral structural proteins

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_006998.1 Reference assembly

      Range
      81323..82324
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_232977.1 multifunctional poly-A polymerase subunit [Vaccinia virus]

      See identical proteins and their annotated locations for YP_232977.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P07617, Q76ZT1
      UniProtKB/TrEMBL
      A0A160NBG3, A0A2I2MDB0, A0A2I6TDT0, A9J1R0
      Conserved Domains (1) summary
      PHA03108
      Location:1 → 300
      PHA03108; poly(A) polymerase small subunit; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    AAB19921.1
    AAO89374.1

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