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    Khdc1a KH domain containing 1A [ Mus musculus (house mouse) ]

    Gene ID: 368204, updated on 27-Jan-2018

    Summary

    Official Symbol
    Khdc1aprovided by MGI
    Official Full Name
    KH domain containing 1Aprovided by MGI
    Primary source
    MGI:MGI:2676610
    See related
    Ensembl:ENSMUSG00000067750 Vega:OTTMUSG00000033754
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ndg1; C88118; AU014713
    Expression
    Biased expression in genital fat pad adult (RPKM 1.1), ovary adult (RPKM 0.6) and 6 other tissues See more

    Genomic context

    See Khdc1a in Genome Data Viewer
    Location:
    1; 1 A4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (21349677..21352199)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (21339758..21342280)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene predicted gene 4956 Neighboring gene predicted gene, 21909 Neighboring gene KH domain containing 1C Neighboring gene predicted gene, 33147 Neighboring gene KH domain containing 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    identical protein binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    poly(U) RNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    KH homology domain-containing protein 1A
    Names
    KH homology domain containing 1A
    Nur77 downstream protein 1
    nur77 downstream gene 1 protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183322.2NP_899145.2  KH homology domain-containing protein 1A

      See identical proteins and their annotated locations for NP_899145.2

      Status: VALIDATED

      Source sequence(s)
      AK136166, AK162365, BB712184, BY725559
      Consensus CDS
      CCDS14848.1
      UniProtKB/Swiss-Prot
      Q3UWR2
      Related
      ENSMUSP00000085749.3, OTTMUSP00000045909, ENSMUST00000088407.3, OTTMUST00000085058
      Conserved Domains (1) summary
      cd12795
      Location:1103
      FILIA_N_like; FILIA-N KH-like domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      21349677..21352199
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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