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    Khdc1a KH domain containing 1A [ Mus musculus (house mouse) ]

    Gene ID: 368204, updated on 16-Oct-2021

    Summary

    Official Symbol
    Khdc1aprovided by MGI
    Official Full Name
    KH domain containing 1Aprovided by MGI
    Primary source
    MGI:MGI:2676610
    See related
    Ensembl:ENSMUSG00000067750
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ndg1; C88118; AU014713
    Expression
    Biased expression in genital fat pad adult (RPKM 1.1), ovary adult (RPKM 0.6) and 6 other tissues See more
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    Genomic context

    See Khdc1a in Genome Data Viewer
    Location:
    1; 1 A4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (21419901..21422423)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (21349677..21352199)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (21339758..21342280)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene 4956 Neighboring gene predicted gene, 21909 Neighboring gene KH domain containing 1C Neighboring gene predicted gene, 33147 Neighboring gene KH domain containing 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables poly(U) RNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in activation of cysteine-type endopeptidase activity involved in apoptotic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    KH homology domain-containing protein 1A
    Names
    KH homology domain containing 1A
    Nur77 downstream protein 1
    nur77 downstream gene 1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183322.2NP_899145.2  KH homology domain-containing protein 1A

      See identical proteins and their annotated locations for NP_899145.2

      Status: VALIDATED

      Source sequence(s)
      AK136166, AK162365, BB712184, BY725559
      Consensus CDS
      CCDS14848.1
      UniProtKB/Swiss-Prot
      Q3UWR2
      Related
      ENSMUSP00000085749.4, ENSMUST00000088407.4
      Conserved Domains (1) summary
      cd12795
      Location:1103
      FILIA_N_like; FILIA-N KH-like domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      21419901..21422423
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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