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    Ltv1 LTV1 ribosome biogenesis factor [ Mus musculus (house mouse) ]

    Gene ID: 353258, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ltv1provided by MGI
    Official Full Name
    LTV1 ribosome biogenesis factorprovided by MGI
    Primary source
    MGI:MGI:2447810
    See related
    Ensembl:ENSMUSG00000019814
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2610020N02Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 14.6), placenta adult (RPKM 12.9) and 25 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ltv1 in Genome Data Viewer
    Location:
    10; 10 A2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (13054341..13068881, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (13178597..13193137, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (12898443..12912943, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene pleiomorphic adenoma gene-like 1 Neighboring gene hydatidiform mole associated and imprinted transcript Neighboring gene zinc finger, C2HC-type containing 1B Neighboring gene phosphatase and actin regulator 2 Neighboring gene predicted gene, 46211 Neighboring gene fucosidase, alpha-L- 2, plasma

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in ribosomal small subunit biogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in ribosomal small subunit export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of preribosome, small subunit precursor IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    protein LTV1 homolog
    Names
    LTV1 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_181470.4NP_852135.1  protein LTV1 homolog

      See identical proteins and their annotated locations for NP_852135.1

      Status: PROVISIONAL

      Source sequence(s)
      BC067062
      Consensus CDS
      CCDS35845.1
      UniProtKB/Swiss-Prot
      Q6NSQ7
      Related
      ENSMUSP00000019950.5, ENSMUST00000019950.6
      Conserved Domains (2) summary
      pfam04180
      Location:15440
      LTV; Low temperature viability protein
      pfam08079
      Location:422462
      Ribosomal_L30_N; Ribosomal L30 N-terminal domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      13054341..13068881 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006512776.4XP_006512839.1  protein LTV1 homolog isoform X1

      Conserved Domains (1) summary
      pfam04180
      Location:1266
      LTV; Low temperature viability protein
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