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    CG13086 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 35208, updated on 4-Apr-2024

    Summary

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    Official Symbol
    CG13086provided by FlyBase
    Primary source
    FLYBASE:FBgn0032770
    Locus tag
    Dmel_CG13086
    See related
    AllianceGenome:FB:FBgn0032770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG13086
    Summary
    Predicted to enable carbohydrate binding activity. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See CG13086 in Genome Data Viewer
    Location:
    37D2-37D2; 2-54 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (19364375..19365470)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (19364375..19365470)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45258 Neighboring gene doughnut on 2 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Body size in Drosophila: genetic architecture, allometries and sexual dimorphism. Carreira VP, et al. Heredity (Edinb), 2009 Mar. PMID 19018274
    2. Lectin-like proteins in model organisms: implications for evolution of carbohydrate-binding activity. Dodd RB, et al. Glycobiology, 2001 May. PMID 11425795
    3. Comparative genomic analysis of C-type lectin-domain genes in seven holometabolous insect species. Lu Y, et al. Insect Biochem Mol Biol, 2020 Nov. PMID 32841718
    4. Participation of a galactose-specific C-type lectin in Drosophila immunity. Tanji T, et al. Biochem J, 2006 May 15. PMID 16475980, Free PMC Article
    5. Transcriptomic analysis of inbreeding depression in cold-sensitive Drosophila melanogaster shows upregulation of the immune response. Vermeulen CJ, et al. J Evol Biol, 2013 Sep. PMID 23944235

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables carbohydrate binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13086-PA
    CG13086-PB
    CG13086-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      19364375..19365470
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001273639.1 → NP_001260568.1  uncharacterized protein Dmel_CG13086, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260568.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VIY0
      Conserved Domains (1) summary
      cd00037
      Location:48 → 170
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

    2. NM_136112.3 → NP_609956.1  uncharacterized protein Dmel_CG13086, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_609956.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VIY0
      Related
      FBpp0080738
      Conserved Domains (1) summary
      cd00037
      Location:48 → 170
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

    3. NM_001273640.1 → NP_001260569.1  uncharacterized protein Dmel_CG13086, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260569.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PD58
      Conserved Domains (1) summary
      cd00037
      Location:63 → 155
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9PD58 M9PD58
    Q9VIY0 Q9VIY0

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