Format

Send to:

Choose Destination
    • Showing Current items.

    Cnot4 CCR4-NOT transcription complex subunit 4 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34416, updated on 8-Oct-2018

    Summary

    Official Symbol
    Cnot4provided by FlyBase
    Official Full Name
    CCR4-NOT transcription complex subunit 4provided by FlyBase
    Primary source
    FLYBASE:FBgn0051716
    Locus tag
    Dmel_CG31716
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster (old-lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG31716; CG5244; cg5251; CG5251; Cont4; Dmel\CG31716; not4; Not4; NOT4; Q8IPB9_DROME

    Genomic context

    See Cnot4 in Genome Data Viewer
    Location:
    31E1-31E1; 2-42 cM
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    Release 6.13 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (10396716..10403206)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (10396716..10403206)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene daughterless Neighboring gene ncRNA Neighboring gene Malate dehydrogenase 1 Neighboring gene uncharacterized protein Neighboring gene Like Sm protein 4 Neighboring gene Ionotropic receptor 31a Neighboring gene Ribosomal protein S27A Neighboring gene Intronic Protein 259

    Genomic regions, transcripts, and products

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    ubiquitin-protein transferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ubiquitin-protein transferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    zinc ion binding ISM
    Inferred from Sequence Model
    more info
    PubMed 
    Process Evidence Code Pubs
    positive regulation of JAK-STAT cascade IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein ubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein ubiquitination ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    CCR4-NOT complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    CCR4-NOT transcription complex subunit 4
    Names
    CG31716-PA
    CG31716-PB
    CG31716-PC
    CG31716-PD
    CG31716-PE
    CG31716-PG
    CG31716-PH
    CG31716-PI
    CG31716-PJ
    CG31716-PK
    CG31716-PL
    Cnot4-PA
    Cnot4-PB
    Cnot4-PC
    Cnot4-PD
    Cnot4-PE
    Cnot4-PG
    Cnot4-PH
    Cnot4-PI
    Cnot4-PJ
    Cnot4-PK
    Cnot4-PL
    cnot 4 homologue

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      10396716..10403206
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001273414.1NP_001260343.1  CCR4-NOT transcription complex subunit 4, isoform K [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260343.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PB92
      Related
      FBpp0304028, FBtr0331638
      Conserved Domains (2) summary
      cd12438
      Location:103203
      RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
      pfam14570
      Location:1359
      zf-RING_4; RING/Ubox like zinc-binding domain
    2. NM_001201847.2NP_001188776.1  CCR4-NOT transcription complex subunit 4, isoform H [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188776.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9MRH8
      Related
      FBpp0293055, FBtr0304112
      Conserved Domains (2) summary
      cd12438
      Location:103200
      RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
      pfam14570
      Location:1359
      zf-RING_4; RING/Ubox like zinc-binding domain
    3. NM_001273415.1NP_001260344.1  CCR4-NOT transcription complex subunit 4, isoform L [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260344.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PCL9
      Related
      FBpp0304029, FBtr0331639
      Conserved Domains (2) summary
      cd12438
      Location:103203
      RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
      pfam14570
      Location:1359
      zf-RING_4; RING/Ubox like zinc-binding domain
    4. NM_164919.3NP_723578.1  CCR4-NOT transcription complex subunit 4, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_723578.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VKX1
      Related
      FBpp0079599, FBtr0080009
      Conserved Domains (2) summary
      cd12438
      Location:103200
      RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
      pfam14570
      Location:1359
      zf-RING_4; RING/Ubox like zinc-binding domain
    5. NM_001201848.2NP_001188777.1  CCR4-NOT transcription complex subunit 4, isoform I [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188777.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IPB9
      Related
      FBpp0293056, FBtr0304113
      Conserved Domains (2) summary
      cd12438
      Location:103200
      RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
      pfam14570
      Location:1359
      zf-RING_4; RING/Ubox like zinc-binding domain
    6. NM_164923.3NP_723582.1  CCR4-NOT transcription complex subunit 4, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_723582.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VKX1
      Related
      FBpp0079602, FBtr0080012
      Conserved Domains (2) summary
      cd12438
      Location:103200
      RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
      pfam14570
      Location:1359
      zf-RING_4; RING/Ubox like zinc-binding domain
    7. NM_164921.3NP_723580.1  CCR4-NOT transcription complex subunit 4, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_723580.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VKX1
      Related
      FBpp0079600, FBtr0080010
      Conserved Domains (2) summary
      cd12438
      Location:103200
      RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
      pfam14570
      Location:1359
      zf-RING_4; RING/Ubox like zinc-binding domain
    8. NM_164922.3NP_723581.1  CCR4-NOT transcription complex subunit 4, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_723581.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VKX1
      Related
      FBpp0079601, FBtr0080011
      Conserved Domains (2) summary
      cd12438
      Location:103200
      RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
      pfam14570
      Location:1359
      zf-RING_4; RING/Ubox like zinc-binding domain
    9. NM_001273413.1NP_001260342.1  CCR4-NOT transcription complex subunit 4, isoform J [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260342.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PFI0
      Related
      FBpp0304027, FBtr0331637
      Conserved Domains (2) summary
      cd12438
      Location:103203
      RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
      pfam14570
      Location:1359
      zf-RING_4; RING/Ubox like zinc-binding domain
    10. NM_164920.3NP_723579.1  CCR4-NOT transcription complex subunit 4, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_723579.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VKX1
      Related
      FBpp0079603, FBtr0080013
      Conserved Domains (2) summary
      cd12438
      Location:103200
      RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
      pfam14570
      Location:1359
      zf-RING_4; RING/Ubox like zinc-binding domain
    11. NM_164924.2NP_723583.1  CCR4-NOT transcription complex subunit 4, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_723583.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IPB9
      Related
      FBpp0079604, FBtr0080014
      Conserved Domains (2) summary
      cd12438
      Location:103200
      RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
      pfam14570
      Location:1359
      zf-RING_4; RING/Ubox like zinc-binding domain
    Support Center